Commit | Line | Data |
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c3bc4705 BA |
1 | generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, |
2 | rank = c(1,2,4)) | |
3 | { | |
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4 | testFolder = "data/" |
5 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
c3bc4705 | 6 | |
f1b906da | 7 | tau = 1e-6 |
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8 | pi = rep(1.0/k, k) |
9 | rho = array(0, dim=c(m,m,k)) | |
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10 | for(i in 1:k){ |
11 | rho[,,i] = diag(1,m) | |
12 | } | |
9ade3f1b | 13 | require(valse) |
c3bc4705 BA |
14 | io = valse:::generateIOdefault(n, p, m, k) |
15 | ||
f1b906da | 16 | #save inputs |
c3bc4705 BA |
17 | write.table(as.double(rho), paste(testFolder,"rho",sep=""), |
18 | row.names=F, col.names=F) | |
19 | write.table(as.double(pi), paste(testFolder,"pi",sep=""), | |
20 | row.names=F, col.names=F) | |
21 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
22 | row.names=F, col.names=F) | |
23 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
24 | row.names=F, col.names=F) | |
25 | write.table(as.double(io$X), paste(testFolder,"X",sep=""), | |
26 | row.names=F, col.names=F) | |
27 | write.table(as.double(io$Y), paste(testFolder,"Y",sep=""), | |
28 | row.names=F, col.names=F) | |
29 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
30 | row.names=F, col.names=F) | |
31 | write.table(as.integer(rank), paste(testFolder,"rank",sep=""), | |
32 | row.names=F, col.names=F) | |
33 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), | |
34 | row.names=F, col.names=F) | |
35 | ||
36 | res = EMGrank(pi,rho,mini,maxi,io$X,io$Y,tau,rank) | |
37 | ||
f1b906da | 38 | #save output |
c3bc4705 BA |
39 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F) |
40 | write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F) | |
f1b906da | 41 | } |