Commit | Line | Data |
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c3bc4705 BA |
1 | generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, |
2 | rank = c(1,2,4)) | |
3 | { | |
f1b906da | 4 | tau = 1e-6 |
f1b906da | 5 | pi = rep(1.0/k, k) |
ef67d338 BA |
6 | rho = array(dim=c(m,m,k)) |
7 | for(i in 1:k) | |
f1b906da | 8 | rho[,,i] = diag(1,m) |
9ade3f1b | 9 | require(valse) |
ef67d338 | 10 | xy = valse:::generateXYdefault(n, p, m, k) |
c3bc4705 | 11 | |
ef67d338 BA |
12 | testFolder = "data/" |
13 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
f1b906da | 14 | #save inputs |
c3bc4705 BA |
15 | write.table(as.double(rho), paste(testFolder,"rho",sep=""), |
16 | row.names=F, col.names=F) | |
17 | write.table(as.double(pi), paste(testFolder,"pi",sep=""), | |
18 | row.names=F, col.names=F) | |
19 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
20 | row.names=F, col.names=F) | |
21 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
22 | row.names=F, col.names=F) | |
ef67d338 | 23 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), |
c3bc4705 | 24 | row.names=F, col.names=F) |
ef67d338 | 25 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), |
c3bc4705 BA |
26 | row.names=F, col.names=F) |
27 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
28 | row.names=F, col.names=F) | |
29 | write.table(as.integer(rank), paste(testFolder,"rank",sep=""), | |
30 | row.names=F, col.names=F) | |
ef67d338 | 31 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensxyns",sep=""), |
c3bc4705 BA |
32 | row.names=F, col.names=F) |
33 | ||
ef67d338 | 34 | res = EMGrank(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank) |
c3bc4705 | 35 | |
f1b906da | 36 | #save output |
c3bc4705 BA |
37 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F) |
38 | write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F) | |
f1b906da | 39 | } |