[aggexp.git] / scripts / make_summaries / launchReports.sh

#!/bin/bash

mkdir -p ../summariesByStation

files=`ls ../aggexp/data/*.csv`
for file in $files; do
	stationName=`basename -s .csv $file`
	sed "s/STATIONNAME/$stationName/g" modele.Rnw > tmp.Rnw
	case $stationName in
	"ALE"|"MRA"|"NEI"|"MAS")
		sed -i "s/EXPERTSINDICES/c(1:4,6:10)/" tmp.Rnw
		;;
	*)
		sed -i "s/EXPERTSINDICES/1:10/" tmp.Rnw
		;;
	esac
	R CMD BATCH runSummary.R
	pdflatex tmp.tex
	mv tmp.pdf ../summariesByStation/$stationName.pdf
done

rm -f tmp*
rm -f .RData
rm -f runSummary.Rout
if [ -d figs/ ]; then
	rm -rf figs/
fi
Commit	Line	Data
	1	#!/bin/bash
	2
	3	mkdir -p ../summariesByStation
	4
	5	files=`ls ../aggexp/data/*.csv`
	6	for file in $files; do
	7	stationName=`basename -s .csv $file`
	8	sed "s/STATIONNAME/$stationName/g" modele.Rnw > tmp.Rnw
	9	case $stationName in
	10	"ALE"\|"MRA"\|"NEI"\|"MAS")
	11	sed -i "s/EXPERTSINDICES/c(1:4,6:10)/" tmp.Rnw
	12	;;
	13	*)
	14	sed -i "s/EXPERTSINDICES/1:10/" tmp.Rnw
	15	;;
	16	esac
	17	R CMD BATCH runSummary.R
	18	pdflatex tmp.tex
	19	mv tmp.pdf ../summariesByStation/$stationName.pdf
	20	done
	21
	22	rm -f tmp*
	23	rm -f .RData
	24	rm -f runSummary.Rout
	25	if [ -d figs/ ]; then
	26	rm -rf figs/
	27	fi