code/main.sh

   1 #!/bin/bash
   2 #PBS -l walltime=00:05:00
   3 #PBS -l nodes=2:ppn=8,pmem=1gb
   4 #PBS -oe .output
   5
   6 WORKDIR="/workdir2/auder/edfclust/code"
   7 cd $WORKDIR
   8
   9 rm -f .output
  10
  11 saveLibPath=$LD_LIBRARY_PATH
  12
  13 #TODO: CDS as a module
  14 LD_LIBRARY_PATH=/workdir2/cds/lib:/opt/openmpi/lib:$LD_LIBRARY_PATH
  15 export LD_LIBRARY_PATH
  16
  17 #TODO: externalize (de)serialization, do not make assumptions on "how is data stored" (...)
  18
  19 # ppam args (in case of clustering) =
  20 #   1: path to binary dataset
  21 #   2: series per processor
  22 #   3: number of clusters
  23 #   4: boolean to randomize series sampling
  24 #   5: type of distance (1 for L1, 2 for L2...)
  25
  26 #TODO: Hybrid MPI+OpenMP
  27 mpirun -np 16 ppam cluster ../data/2009_first10000.bin 300 7 0 1
  28
  29 LD_LIBRARY_PATH=$saveLibPath
  30 export LD_LIBRARY_PATH