progress in debug: fix LLF/llh mismatch, and length + add adapter test in test/

[valse.git] / test / generateRunSaveTest_EMGLLF.R

source("helper.R")
library(valse)

generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
	gamma=1., lambda=0.5, eps=1e-6)
{
	testFolder = "data/"
	dir.create(testFolder, showWarnings=FALSE, mode="0755")

	params = basicInitParameters(n, p, m, k)
	xy = generateXYdefault(n, p, m, k)

	#save inputs
	write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
		row.names=F, col.names=F)
	write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
		row.names=F, col.names=F)
	write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
		row.names=F, col.names=F)
	write.table(as.double(eps), paste(testFolder,"eps",sep=""),
		row.names=F, col.names=F)
	write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
		row.names=F, col.names=F)

	res = valse::EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,
		maxi,gamma,lambda,xy$X,xy$Y,eps,fast=FALSE)

	#save outputs
	write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F)
	write.table(as.double(res$rho),paste(testFolder,"rho",sep=""),row.names=F,col.names=F)
	write.table(as.double(res$pi),paste(testFolder,"pi",sep=""),row.names=F,col.names=F)
	write.table(as.double(res$llh),paste(testFolder,"llh",sep=""),row.names=F,col.names=F)
	write.table(as.double(res$S),paste(testFolder,"S",sep=""),row.names=F,col.names=F)
	write.table(as.integer(res$affec),paste(testFolder,"affec",sep=""),row.names=F,col.names=F)
}