-generateRunSaveTest_selectiontotale= function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)){
+generateRunSaveTest_selectiontotale= function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
+ glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
+{
testFolder = "data/"
dir.create(testFolder, showWarnings=FALSE, mode="0755")
- delimiter = " "
-
- #Generate phiInit,piInit,...
- params = basicInitParameters(n, p, m, k)
-
- #Generate X and Y
- generateIOdef = generateIOdefault(n, p, m, k)
-
+
+ require(valse)
+ params = valse:::basic_Init_Parameters(n, p, m, k)
+ io = valse:::generateIOdefault(n, p, m, k)
+
#save inputs
- write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter)
- write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter)
- write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter)
- write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter)
- write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
- write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
- write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter)
- write.table(paste(testFolder,"lambda",sep=""), glambda, sep=delimiter)
- write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter)
- write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter)
- write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
- write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
-
-
- selec = selectiontotale(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,gamma,glambda,generateIOdef$X,generateIOdef$Y,seuil, tau)
-
+ write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(glambda), paste(testFolder,"lambda",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(io$X), paste(testFolder,"X",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+ row.names=F, col.names=F)
+
+ res = selectiontotale(params$phiInit,params$rhoInit,params$piInit,params$gamInit,
+ mini,maxi,gamma,glambda,io$X,io$Y,seuil, tau)
+
#save output
- write.table(paste(testFolder,"A1",sep=""), selec$A1, sep=delimiter)
- write.table(paste(testFolder,"A2",sep=""), selec$A2, sep=delimiter)
- write.table(paste(testFolder,"rho",sep=""), selec$rho, sep=delimiter)
- write.table(paste(testFolder,"pi",sep=""), selec$pi, sep=delimiter)
+ write.table(as.double(res$A1), paste(testFolder,"A1",sep=""), row.names=F, col.names=F)
+ write.table(as.double(res$A2), paste(testFolder,"A2",sep=""), row.names=F, col.names=F)
+ write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
+ write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
}