test/generateRunSaveTest_EMGrank.R

   1 source("helper.R")
   2 library(valse)
   3
   4 generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, rank = c(1,2,4))
   5 {
   6   eps = 1e-6
   7   Pi = rep(1.0/k, k)
   8   Rho = array(dim=c(m,m,k))
   9   for(i in 1:k)
  10     Rho[,,i] = diag(1,m)
  11   xy = generateXYdefault(n, p, m, k)
  12
  13   testFolder = "./data/"
  14   dir.create(testFolder, showWarnings=FALSE, mode="0755")
  15   #save inputs
  16     write.table(as.double(Pi), paste(testFolder,"Pi",sep=""),
  17         row.names=F, col.names=F)
  18   write.table(as.double(Rho), paste(testFolder,"Rho",sep=""),
  19         row.names=F, col.names=F)
  20   write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  21         row.names=F, col.names=F)
  22   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  23         row.names=F, col.names=F)
  24   write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  25         row.names=F, col.names=F)
  26   write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  27         row.names=F, col.names=F)
  28   write.table(as.double(eps), paste(testFolder,"eps",sep=""),
  29         row.names=F, col.names=F)
  30   write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
  31         row.names=F, col.names=F)
  32   write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
  33         row.names=F, col.names=F)
  34
  35   res = valse::EMGrank(Pi,Rho,mini,maxi,xy$X,xy$Y,eps,rank,fast=FALSE)
  36
  37   #save output
  38   write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F)
  39   write.table(as.double(res$LLF),paste(testFolder,"LLF",sep=""),row.names=F,col.names=F)
  40 }