test/generateRunSaveTest_EMGLLF.R

   1 source("helper.R")
   2 library(valse)
   3
   4 generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1., lambda=0.5, eps=1e-6)
   5 {
   6     testFolder = "./data/"
   7     dir.create(testFolder, showWarnings=FALSE, mode="0755")
   8
   9     params = basicInitParameters(n, p, m, k)
  10     xy = generateXYdefault(n, p, m, k)
  11
  12     #save inputs
  13     write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
  14         row.names=F, col.names=F)
  15     write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
  16         row.names=F, col.names=F)
  17     write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
  18         row.names=F, col.names=F)
  19     write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
  20         row.names=F, col.names=F)
  21     write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  22         row.names=F, col.names=F)
  23     write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  24         row.names=F, col.names=F)
  25     write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
  26         row.names=F, col.names=F)
  27     write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
  28         row.names=F, col.names=F)
  29     write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  30         row.names=F, col.names=F)
  31     write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  32         row.names=F, col.names=F)
  33     write.table(as.double(eps), paste(testFolder,"eps",sep=""),
  34         row.names=F, col.names=F)
  35     write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
  36         row.names=F, col.names=F)
  37
  38     res = valse::EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,
  39         maxi,gamma,lambda,xy$X,xy$Y,eps,fast=FALSE)
  40
  41     #save outputs
  42     write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F)
  43     write.table(as.double(res$rho),paste(testFolder,"rho",sep=""),row.names=F,col.names=F)
  44     write.table(as.double(res$pi),paste(testFolder,"pi",sep=""),row.names=F,col.names=F)
  45     write.table(as.double(res$llh),paste(testFolder,"llh",sep=""),row.names=F,col.names=F)
  46     write.table(as.double(res$S),paste(testFolder,"S",sep=""),row.names=F,col.names=F)
  47     write.table(as.integer(res$affec),paste(testFolder,"affec",sep=""),row.names=F,col.names=F)
  48 }