From: Benjamin Goehry Date: Mon, 16 Jan 2017 11:54:48 +0000 (+0100) Subject: ajout test X-Git-Url: https://git.auder.net/doc/html/pieces/current/img/common.css?a=commitdiff_plain;h=dc4252096180c25408d656a1442579bbd8dfa82f;p=valse.git ajout test --- diff --git a/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R new file mode 100644 index 0000000..d367bfd --- /dev/null +++ b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoMLE.R @@ -0,0 +1,76 @@ +generateRunSaveTest_constructionModelesLassoMLE = function(n, p, m, k, mini, maxi, gamma, glambda, varargin){ + #set defaults for optional inputs + optargs = c(200 15 10 3 5 10 1.0 list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)) + #replace defaults by user parameters + optargs[1:length(varargin)] = varargin + n = optargs[1] + p = optargs[2] + m = optargs[3] + k = optargs[4] + mini = optargs[5] + maxi = optargs[6] + gamma = optargs[7] + glambda = optargs[8] + tau = 1e-6 + seuil = 1e-15 + L = length(glambda) + + #Generate phiInit,piInit,... + basicInit = basicInitParameters(n, p, m, k) + phiInit = basicInit$phiInit + rhoInit = basicInit$rhoInit + piInit = basicInit$piInit + gamInit = basicInit$gamInit + + #Generate X and Y + generateIOdef = generateIOdefault(n, p, m, k) + X = generateIOdef$X + Y = generateIOdef$Y + + A2 = array(0, dim=c(p, m+1, L)) + A1 = array(0, dim=c(p, m+1, L)) + for(i in 1:L){ + for(j in 1:p){ + A2[j, 1, i] = j + A1[j, 1, i] = j + } + for(k in 1:5){ + A2[k,2,i] = k + A1[k,2,i] = k + } + } + + testFolder = 'data/' + dir.create(testFolder) + delimiter = ' ' + + + #save inputs + write(strcat(testFolder,'phiInit'), reshape(phiInit,1), delimiter) + write(strcat(testFolder,'rhoInit'), reshape(rhoInit,1), delimiter) + write(strcat(testFolder,'piInit'), piInit, delimiter) + write(strcat(testFolder,'gamInit'), reshape(gamInit,1), delimiter) + write(strcat(testFolder,'mini'), mini, delimiter) + write(strcat(testFolder,'maxi'), maxi, delimiter) + write(strcat(testFolder,'gamma'), gamma, delimiter) + write(strcat(testFolder,'glambda'), glambda, delimiter) + write(strcat(testFolder,'X'), reshape(X,1), delimiter) + write(strcat(testFolder,'Y'), reshape(Y,1), delimiter) + mwrite(strcat(testFolder,'seuil'), seuil, delimiter) + write(strcat(testFolder,'tau'), tau, delimiter) + write(strcat(testFolder,'A1'), reshape(A1,1), delimiter) + write(strcat(testFolder,'A2'), reshape(A2,1), delimiter) + write(strcat(testFolder,'dimensions'), [n,p,m,k,L], delimiter) + + construct_LME = constructionModelesLassoMLE(phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,glambda,X,Y,seuil,tau,A1,A2) + phi = construct_LME$phi + rho = construct_LME$rho + pi = construct_LME$pi + lvraisemblance = construct_LME$lvraisemblance + + #save output + write(strcat(testFolder,'phi'), reshape(phi,1), delimiter); + write(strcat(testFolder,'rho'), reshape(rho,1), delimiter); + write(strcat(testFolder,'pi'), reshape(pi,1), delimiter); + write(strcat(testFolder,'lvraisemblance'), reshape(lvraisemblance,1), delimiter); +}