From: Benjamin Auder <benjamin.auder@somewhere>
Date: Tue, 27 Feb 2018 14:33:36 +0000 (+0100)
Subject: Get index information into prepareArgs for multirun()
X-Git-Url: https://git.auder.net/doc/html/%7B%7B%20asset%28%27mixstore/images/current/git-logo.png?a=commitdiff_plain;h=5fc1b9d9bbb20ebf5228792f5885b77991c0cec9;p=morpheus.git

Get index information into prepareArgs for multirun()
---

diff --git a/pkg/R/multiRun.R b/pkg/R/multiRun.R
index 0a5c843..0a2a833 100644
--- a/pkg/R/multiRun.R
+++ b/pkg/R/multiRun.R
@@ -39,8 +39,11 @@
 #'       model=FLXMRglm(family="binomial") ) )
 #'     normalize( matrix(out@@coef[1:(ncol(fargs$X)*K)], ncol=K) )
 #'   } ),
-#'   prepareArgs = function(fargs) {
-#'     fargs$ind <- sample(1:nrow(fargs$X),replace=TRUE)
+#'   prepareArgs = function(fargs,index) {
+#'     if (index == 1)
+#'       fargs$ind <- 1:nrow(fargs$X)
+#'     else
+#'       fargs$ind <- sample(1:nrow(fargs$X),replace=TRUE)
 #'     fargs
 #'   }, N=10, ncores=3)
 #' for (i in 1:2)
@@ -65,7 +68,7 @@
 #'       model=FLXMRglm(family="binomial") ) )
 #'     sapply( seq_len(K), function(i) as.double( out@@components[[1]][[i]][,1] ) )
 #'   } ),
-#'   prepareArgs = function(fargs) {
+#'   prepareArgs = function(fargs,index) {
 #'     library(morpheus)
 #'     io = generateSampleIO(fargs$n, fargs$p, fargs$β, fargs$b, fargs$optargs$link)
 #'     fargs$X = io$X
@@ -78,7 +81,7 @@
 #'   res[[i]] <- alignMatrices(res[[i]], ref=β, ls_mode="exact")}
 #' @export
 multiRun <- function(fargs, estimParams,
-	prepareArgs = function(x) x, N=10, ncores=3, agg=lapply, verbose=FALSE)
+	prepareArgs = function(x,i) x, N=10, ncores=3, agg=lapply, verbose=FALSE)
 {
 	if (!is.list(fargs))
 		stop("fargs: list")
@@ -95,7 +98,7 @@ multiRun <- function(fargs, estimParams,
 
 	estimParamAtIndex <- function(index)
 	{
-		fargs <- prepareArgs(fargs)
+		fargs <- prepareArgs(fargs, index)
 		if (verbose)
 			cat("Run ",index,"\n")
 		lapply(seq_along(estimParams), function(i) {
diff --git a/pkg/R/plot.R b/pkg/R/plot.R
index f94f19a..0097607 100644
--- a/pkg/R/plot.R
+++ b/pkg/R/plot.R
@@ -18,7 +18,7 @@ extractParam <- function(mr, x=1, y=1)
 #'
 #' @param mr Output of multiRun(), list of lists of functions results
 #' @param x Row index of the element inside the aggregated parameter
-#' @param y Colomn index of the element inside the aggregated parameter
+#' @param y Column index of the element inside the aggregated parameter
 #'
 #' @examples
 #' \dontrun{