epclust.git
7 years agoWith sync_mean to average synchrones: bad idea, will be removed
Benjamin Auder [Sat, 11 Mar 2017 12:57:24 +0000 (13:57 +0100)]
With sync_mean to average synchrones: bad idea, will be removed

7 years agosave state; test clustering not OK, all others OK
Benjamin Auder [Fri, 10 Mar 2017 21:55:26 +0000 (22:55 +0100)]
save state; test clustering not OK, all others OK

7 years agofixes: TODO, debug test.clustering.R and finish writing clustering.R
Benjamin Auder [Fri, 10 Mar 2017 18:04:45 +0000 (19:04 +0100)]
fixes: TODO, debug test.clustering.R and finish writing clustering.R

7 years agosave state: wrong idea for indices repartition
Benjamin Auder [Fri, 10 Mar 2017 15:43:00 +0000 (16:43 +0100)]
save state: wrong idea for indices repartition

7 years ago'update'
Benjamin Auder [Fri, 10 Mar 2017 11:38:09 +0000 (12:38 +0100)]
'update'

7 years agoAdd comments to easily read code
Benjamin Auder [Fri, 10 Mar 2017 11:09:09 +0000 (12:09 +0100)]
Add comments to easily read code

7 years agoTODO: args, et finir tests; relancer
Benjamin Auder [Fri, 10 Mar 2017 07:10:49 +0000 (08:10 +0100)]
TODO: args, et finir tests; relancer

7 years agodraft final form of current package
Benjamin Auder [Thu, 9 Mar 2017 16:22:09 +0000 (17:22 +0100)]
draft final form of current package

7 years agoadd submodule enercast
Benjamin Auder [Thu, 9 Mar 2017 16:04:05 +0000 (17:04 +0100)]
add submodule enercast

7 years agosave intermediate
Benjamin Auder [Thu, 9 Mar 2017 14:56:37 +0000 (15:56 +0100)]
save intermediate

7 years agofix typo, add some TODO
Benjamin Auder [Thu, 9 Mar 2017 10:58:25 +0000 (11:58 +0100)]
fix typo, add some TODO

7 years ago'update'
Benjamin Auder [Thu, 9 Mar 2017 03:26:00 +0000 (04:26 +0100)]
'update'

7 years agouse Rcpp; ongoing debug for parallel synchrones computation
Benjamin Auder [Thu, 9 Mar 2017 03:25:51 +0000 (04:25 +0100)]
use Rcpp; ongoing debug for parallel synchrones computation

7 years agoWER distances is a regular matrix, fix doc (weird latex error?)
Benjamin Auder [Wed, 8 Mar 2017 21:30:16 +0000 (22:30 +0100)]
WER distances is a regular matrix, fix doc (weird latex error?)

7 years agoimprovements
Benjamin Auder [Wed, 8 Mar 2017 20:50:53 +0000 (21:50 +0100)]
improvements

7 years ago'update'
Benjamin Auder [Wed, 8 Mar 2017 14:45:31 +0000 (15:45 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Wed, 8 Mar 2017 14:04:44 +0000 (15:04 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Wed, 8 Mar 2017 11:43:45 +0000 (12:43 +0100)]
'update'

7 years agoadd some TODOs
Benjamin Auder [Wed, 8 Mar 2017 10:52:39 +0000 (11:52 +0100)]
add some TODOs

7 years agoparallel version running; TODO: check==sequential, plotting routines, parser; check...
Benjamin Auder [Wed, 8 Mar 2017 02:12:36 +0000 (03:12 +0100)]
parallel version running; TODO: check==sequential, plotting routines, parser; check memory

7 years agoforgot to pass parll arg
Benjamin Auder [Wed, 8 Mar 2017 01:34:24 +0000 (02:34 +0100)]
forgot to pass parll arg

7 years agooption to run sequentially. various fixes. R CMD check OK
Benjamin Auder [Wed, 8 Mar 2017 00:52:24 +0000 (01:52 +0100)]
option to run sequentially. various fixes. R CMD check OK

7 years agoignore generated binary files while debugging
Benjamin Auder [Tue, 7 Mar 2017 02:01:42 +0000 (03:01 +0100)]
ignore generated binary files while debugging

7 years agoFix package, ok for R CMD check - ongoing debug for main function
Benjamin Auder [Tue, 7 Mar 2017 01:54:03 +0000 (02:54 +0100)]
Fix package, ok for R CMD check - ongoing debug for main function

7 years ago'update'
Benjamin Auder [Mon, 6 Mar 2017 21:33:46 +0000 (22:33 +0100)]
'update'

7 years agoadd .nbstripout
Benjamin Auder [Mon, 6 Mar 2017 19:50:09 +0000 (20:50 +0100)]
add .nbstripout

7 years agochange submodules
Benjamin Auder [Mon, 6 Mar 2017 19:47:46 +0000 (20:47 +0100)]
change submodules

7 years agoremove .ppam-mpi submodule
Benjamin Auder [Mon, 6 Mar 2017 19:31:48 +0000 (20:31 +0100)]
remove .ppam-mpi submodule

7 years agoFix unit tests
Benjamin Auder [Mon, 6 Mar 2017 19:18:22 +0000 (20:18 +0100)]
Fix unit tests

7 years agoprepare converter for DB extracts datasets
Benjamin Auder [Mon, 6 Mar 2017 11:50:02 +0000 (12:50 +0100)]
prepare converter for DB extracts datasets

7 years ago'update'
Benjamin Auder [Mon, 6 Mar 2017 11:03:53 +0000 (12:03 +0100)]
'update'

7 years agopreprocessing
Benjamin Auder [Mon, 6 Mar 2017 09:02:03 +0000 (10:02 +0100)]
preprocessing

7 years agode_serialize works. Variables names improved. Code beautified. TODO: clustering tests
Benjamin Auder [Mon, 6 Mar 2017 01:00:29 +0000 (02:00 +0100)]
de_serialize works. Variables names improved. Code beautified. TODO: clustering tests

7 years agothrow away old code, prepare tests
Benjamin Auder [Sun, 5 Mar 2017 16:30:11 +0000 (17:30 +0100)]
throw away old code, prepare tests

7 years agocomplete first draft of package
Benjamin Auder [Sun, 5 Mar 2017 14:36:26 +0000 (15:36 +0100)]
complete first draft of package

7 years agobefore computeSynchrones
Benjamin Auder [Sat, 4 Mar 2017 23:03:37 +0000 (00:03 +0100)]
before computeSynchrones

7 years agowith parallel::export
Benjamin Auder [Sat, 4 Mar 2017 18:00:59 +0000 (19:00 +0100)]
with parallel::export

7 years agoexport vars to nodes
Benjamin Auder [Fri, 3 Mar 2017 14:29:08 +0000 (15:29 +0100)]
export vars to nodes

7 years agotoward better ID+coeffs management
Benjamin Auder [Fri, 3 Mar 2017 11:44:20 +0000 (12:44 +0100)]
toward better ID+coeffs management

7 years ago'update'
Benjamin Auder [Fri, 3 Mar 2017 11:31:15 +0000 (12:31 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Fri, 3 Mar 2017 09:59:16 +0000 (10:59 +0100)]
'update'

7 years agorenaming, refactoring
Benjamin Auder [Mon, 20 Feb 2017 17:31:45 +0000 (18:31 +0100)]
renaming, refactoring

7 years agoreorganize folder
Benjamin Auder [Mon, 20 Feb 2017 08:51:29 +0000 (09:51 +0100)]
reorganize folder

7 years agoset final draft for package
Benjamin Auder [Sun, 19 Feb 2017 23:37:33 +0000 (00:37 +0100)]
set final draft for package

7 years agofinish simplifications on stage2.R
Benjamin Auder [Sat, 18 Feb 2017 13:26:42 +0000 (14:26 +0100)]
finish simplifications on stage2.R

7 years agosimplify stage2.R
Benjamin Auder [Sat, 18 Feb 2017 12:12:01 +0000 (13:12 +0100)]
simplify stage2.R

7 years ago'update'
Benjamin Auder [Fri, 17 Feb 2017 11:09:07 +0000 (12:09 +0100)]
'update'

7 years agoadd clustering method in biblio
Benjamin Auder [Wed, 15 Feb 2017 15:25:23 +0000 (16:25 +0100)]
add clustering method in biblio

7 years agofix stage2.R
Benjamin Auder [Wed, 8 Feb 2017 12:08:07 +0000 (13:08 +0100)]
fix stage2.R

7 years agoavancée sur compréhension de epclust/R/stage2.R
Benjamin Auder [Tue, 31 Jan 2017 15:17:55 +0000 (16:17 +0100)]
avancée sur compréhension de epclust/R/stage2.R

7 years agoprepared step2.R for first tests (old code, reindented, all in one file)
Benjamin Auder [Tue, 31 Jan 2017 10:55:51 +0000 (11:55 +0100)]
prepared step2.R for first tests (old code, reindented, all in one file)

7 years agoupdate code for stage 2 in epclust
Benjamin Auder [Tue, 31 Jan 2017 02:27:43 +0000 (03:27 +0100)]
update code for stage 2 in epclust

7 years ago'update'
Benjamin Auder [Mon, 30 Jan 2017 17:52:10 +0000 (18:52 +0100)]
'update'

7 years agofix comment on initialize.sh
Benjamin Auder [Mon, 30 Jan 2017 15:19:44 +0000 (16:19 +0100)]
fix comment on initialize.sh

7 years agosomewhat unroll the code in WER distances computations
Benjamin Auder [Mon, 30 Jan 2017 12:35:25 +0000 (13:35 +0100)]
somewhat unroll the code in WER distances computations

7 years agoadd git-fat-pull to pre-push hook via initialize.sh
Benjamin Auder [Mon, 30 Jan 2017 01:33:17 +0000 (02:33 +0100)]
add git-fat-pull to pre-push hook via initialize.sh

7 years agocomment on initialize.sh
Benjamin Auder [Mon, 30 Jan 2017 01:05:09 +0000 (02:05 +0100)]
comment on initialize.sh

7 years agofix initialize script (pre-push hook must be executable)
Benjamin Auder [Mon, 30 Jan 2017 00:50:06 +0000 (01:50 +0100)]
fix initialize script (pre-push hook must be executable)

7 years agore-add modules as hidden folders
Benjamin Auder [Mon, 30 Jan 2017 00:33:26 +0000 (01:33 +0100)]
re-add modules as hidden folders

7 years agotemporarily remove modules
Benjamin Auder [Mon, 30 Jan 2017 00:29:35 +0000 (01:29 +0100)]
temporarily remove modules

7 years agoadd initialize.sh script to be run after cloning
Benjamin Auder [Mon, 30 Jan 2017 00:18:59 +0000 (01:18 +0100)]
add initialize.sh script to be run after cloning

7 years agoreorganize .gitignore files
Benjamin Auder [Mon, 30 Jan 2017 00:18:25 +0000 (01:18 +0100)]
reorganize .gitignore files

7 years agodrop potential jupyter usage for R package vignette
Benjamin Auder [Mon, 30 Jan 2017 00:17:18 +0000 (01:17 +0100)]
drop potential jupyter usage for R package vignette

7 years agoadd PDF files through git-fat filters
Benjamin Auder [Mon, 30 Jan 2017 00:15:57 +0000 (01:15 +0100)]
add PDF files through git-fat filters

7 years agoadd submodules ppam-mpi and git-fat
Benjamin Auder [Mon, 30 Jan 2017 00:14:20 +0000 (01:14 +0100)]
add submodules ppam-mpi and git-fat

7 years agouse git fat
Benjamin Auder [Sun, 29 Jan 2017 17:58:10 +0000 (18:58 +0100)]
use git fat

7 years agostop using git-annex
Benjamin Auder [Sat, 21 Jan 2017 10:13:15 +0000 (11:13 +0100)]
stop using git-annex

7 years agoupdate TODO
Benjamin Auder [Thu, 19 Jan 2017 15:39:49 +0000 (16:39 +0100)]
update TODO

7 years agoremove strange file
Benjamin Auder [Thu, 19 Jan 2017 01:34:09 +0000 (02:34 +0100)]
remove strange file

7 years agoadd emergency_code
Benjamin Auder [Thu, 19 Jan 2017 01:33:34 +0000 (02:33 +0100)]
add emergency_code

7 years agoseparate TODO and wrapper example
Benjamin Auder [Thu, 19 Jan 2017 01:08:10 +0000 (02:08 +0100)]
separate TODO and wrapper example

7 years agofirx error in slave.c
Benjamin Auder [Thu, 19 Jan 2017 00:59:47 +0000 (01:59 +0100)]
firx error in slave.c

7 years agocomplete wrapper.R; update TODO
Benjamin Auder [Sat, 14 Jan 2017 18:02:56 +0000 (19:02 +0100)]
complete wrapper.R; update TODO

7 years agoclarify main/classif task
Benjamin Auder [Sat, 14 Jan 2017 17:51:47 +0000 (18:51 +0100)]
clarify main/classif task

7 years agomajor folder reorganisation, R pkg is now epclust/ at first level. Experimental usage...
Benjamin Auder [Sat, 14 Jan 2017 17:08:56 +0000 (18:08 +0100)]
major folder reorganisation, R pkg is now epclust/ at first level. Experimental usage of git-annex

7 years agoTODO: defaults.R + complete parallel launch tasks in main.R
Benjamin Auder [Wed, 11 Jan 2017 02:28:18 +0000 (03:28 +0100)]
TODO: defaults.R + complete parallel launch tasks in main.R

7 years agoFIX: C code (double, float, ...) + wrapper (read/write data, get medoids)
Benjamin Auder [Wed, 11 Jan 2017 02:04:02 +0000 (03:04 +0100)]
FIX: C code (double, float, ...) + wrapper (read/write data, get medoids)

7 years agoimprove wrapper.R to handle files too
Benjamin Auder [Wed, 11 Jan 2017 00:58:48 +0000 (01:58 +0100)]
improve wrapper.R to handle files too

7 years agotypo: missing 'clister' argument
Benjamin Auder [Wed, 11 Jan 2017 00:53:34 +0000 (01:53 +0100)]
typo: missing 'clister' argument

7 years agofinalize R 'wrapper' for stage 1; WARNING: changed series encoding. TODO: test
Benjamin Auder [Wed, 11 Jan 2017 00:47:23 +0000 (01:47 +0100)]
finalize R 'wrapper' for stage 1; WARNING: changed series encoding. TODO: test

7 years agoR.pkg: add a TODO
Benjamin Auder [Tue, 10 Jan 2017 23:02:55 +0000 (00:02 +0100)]
R.pkg: add a TODO

7 years agoprogress on main.R
Benjamin Auder [Mon, 9 Jan 2017 23:40:52 +0000 (00:40 +0100)]
progress on main.R

7 years agowork on main.R
Benjamin Auder [Mon, 9 Jan 2017 18:39:39 +0000 (19:39 +0100)]
work on main.R

7 years agoprogress in main.R
Benjamin Auder [Mon, 9 Jan 2017 14:56:00 +0000 (15:56 +0100)]
progress in main.R

7 years agoprogress in main.R
Benjamin Auder [Mon, 9 Jan 2017 11:06:39 +0000 (12:06 +0100)]
progress in main.R

7 years agoprogress on main.R
Benjamin Auder [Mon, 9 Jan 2017 10:32:45 +0000 (11:32 +0100)]
progress on main.R

7 years agoadvance on main.R
Benjamin Auder [Mon, 9 Jan 2017 02:17:35 +0000 (03:17 +0100)]
advance on main.R

7 years agoprogress on main.R
Benjamin Auder [Fri, 6 Jan 2017 11:33:55 +0000 (12:33 +0100)]
progress on main.R

7 years agowork on draft R package
Benjamin Auder [Fri, 6 Jan 2017 03:04:11 +0000 (04:04 +0100)]
work on draft R package

7 years ago'update'
Benjamin Auder [Wed, 28 Dec 2016 22:42:09 +0000 (23:42 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Thu, 29 Dec 2016 15:16:48 +0000 (16:16 +0100)]
'update'

7 years agoadd notes from december 13rd meeting in Lyon
Benjamin Auder [Sun, 25 Dec 2016 19:57:51 +0000 (20:57 +0100)]
add notes from december 13rd meeting in Lyon

7 years agoLecture du code
Jairo Cugliari [Tue, 13 Dec 2016 11:50:20 +0000 (12:50 +0100)]
Lecture du code

7 years ago'update'
Benjamin Auder [Tue, 13 Dec 2016 00:02:55 +0000 (01:02 +0100)]
'update'

7 years agoadd some comments after meeting 17-11-2016
Benjamin Auder [Thu, 17 Nov 2016 15:56:55 +0000 (16:56 +0100)]
add some comments after meeting 17-11-2016

7 years ago'update'
Benjamin Auder [Tue, 15 Nov 2016 11:54:00 +0000 (12:54 +0100)]
'update'

7 years ago'update'
Benjamin Auder [Wed, 9 Nov 2016 15:23:22 +0000 (16:23 +0100)]
'update'

7 years agoadd code Jairo
Benjamin Auder [Mon, 7 Nov 2016 15:14:22 +0000 (16:14 +0100)]
add code Jairo

8 years agoadd R wrapper for stage 1
Benjamin Auder [Sun, 16 Oct 2016 23:00:12 +0000 (01:00 +0200)]
add R wrapper for stage 1

8 years agotypo
Benjamin Auder [Sun, 16 Oct 2016 22:50:53 +0000 (00:50 +0200)]
typo