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1 | source("helpers/constructionModelesLassoMLE.R") |
2 | ||
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3 | generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, |
4 | maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)) | |
5 | { | |
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6 | tau = 1e-6; |
7 | seuil = 1e-15; | |
8 | L = length(glambda); | |
dc425209 | 9 | A1 = array(0, dim=c(p, m+1, L)) |
ef67d338 | 10 | A2 = array(0, dim=c(p, m+1, L)) |
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11 | for (i in 1:L) |
12 | { | |
c3bc4705 | 13 | A1[,1,i] = seq_len(p) |
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14 | A1[1:5,2,i] = seq_len(5) |
15 | A2[,1,i] = seq_len(p) | |
16 | A2[1:5,2,i] = seq_len(5) | |
dc425209 | 17 | } |
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18 | require(valse) |
19 | params = valse:::basicInitParameters(n, p, m, k) | |
20 | xy = valse:::generateXYdefault(n, p, m, k) | |
c3bc4705 | 21 | |
825cf55f | 22 | testFolder = "../data/" |
ef67d338 | 23 | dir.create(testFolder, showWarnings=FALSE, mode="0755") |
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24 | #save inputs |
25 | write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""), | |
26 | row.names=F, col.names=F) | |
27 | write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""), | |
28 | row.names=F, col.names=F) | |
29 | write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""), | |
30 | row.names=F, col.names=F) | |
31 | write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""), | |
32 | row.names=F, col.names=F) | |
33 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
34 | row.names=F, col.names=F) | |
35 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
36 | row.names=F, col.names=F) | |
37 | write.table(as.double(gamma), paste(testFolder,"gamma",sep=""), | |
38 | row.names=F, col.names=F) | |
46a2e676 | 39 | write.table(as.double(glambda), paste(testFolder,"glambda",sep=""), |
c3bc4705 | 40 | row.names=F, col.names=F) |
ef67d338 | 41 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), |
c3bc4705 | 42 | row.names=F, col.names=F) |
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43 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), |
44 | row.names=F, col.names=F) | |
45 | write.table(as.double(seuil), paste(testFolder,"seuil",sep=""), | |
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46 | row.names=F, col.names=F) |
47 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
48 | row.names=F, col.names=F) | |
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49 | write.table(as.double(A1), paste(testFolder,"A1",sep=""), |
50 | row.names=F, col.names=F) | |
51 | write.table(as.double(A2), paste(testFolder,"A2",sep=""), | |
52 | row.names=F, col.names=F) | |
53 | write.table(as.integer(c(n,p,m,k,L)), paste(testFolder,"dimensions",sep=""), | |
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54 | row.names=F, col.names=F) |
55 | ||
56 | res = constructionModelesLassoMLE( | |
57 | params$phiInit,params$rhoInit,params$piInit,params$gamInit, | |
ef67d338 | 58 | mini,maxi,gamma,glambda,xy$X,xy$Y,seuil,tau,A1,A2) |
c3bc4705 | 59 | |
dc425209 | 60 | #save output |
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61 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F) |
62 | write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F) | |
63 | write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F) | |
64 | write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F) | |
dc425209 | 65 | } |