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Get index information into prepareArgs for multirun()
[morpheus.git]
/
pkg
/
R
/
multiRun.R
diff --git
a/pkg/R/multiRun.R
b/pkg/R/multiRun.R
index
0a5c843
..
0a2a833
100644
(file)
--- a/
pkg/R/multiRun.R
+++ b/
pkg/R/multiRun.R
@@
-39,8
+39,11
@@
#' model=FLXMRglm(family="binomial") ) )
#' normalize( matrix(out@@coef[1:(ncol(fargs$X)*K)], ncol=K) )
#' } ),
#' model=FLXMRglm(family="binomial") ) )
#' normalize( matrix(out@@coef[1:(ncol(fargs$X)*K)], ncol=K) )
#' } ),
-#' prepareArgs = function(fargs) {
-#' fargs$ind <- sample(1:nrow(fargs$X),replace=TRUE)
+#' prepareArgs = function(fargs,index) {
+#' if (index == 1)
+#' fargs$ind <- 1:nrow(fargs$X)
+#' else
+#' fargs$ind <- sample(1:nrow(fargs$X),replace=TRUE)
#' fargs
#' }, N=10, ncores=3)
#' for (i in 1:2)
#' fargs
#' }, N=10, ncores=3)
#' for (i in 1:2)
@@
-65,7
+68,7
@@
#' model=FLXMRglm(family="binomial") ) )
#' sapply( seq_len(K), function(i) as.double( out@@components[[1]][[i]][,1] ) )
#' } ),
#' model=FLXMRglm(family="binomial") ) )
#' sapply( seq_len(K), function(i) as.double( out@@components[[1]][[i]][,1] ) )
#' } ),
-#' prepareArgs = function(fargs) {
+#' prepareArgs = function(fargs
,index
) {
#' library(morpheus)
#' io = generateSampleIO(fargs$n, fargs$p, fargs$β, fargs$b, fargs$optargs$link)
#' fargs$X = io$X
#' library(morpheus)
#' io = generateSampleIO(fargs$n, fargs$p, fargs$β, fargs$b, fargs$optargs$link)
#' fargs$X = io$X
@@
-78,7
+81,7
@@
#' res[[i]] <- alignMatrices(res[[i]], ref=β, ls_mode="exact")}
#' @export
multiRun <- function(fargs, estimParams,
#' res[[i]] <- alignMatrices(res[[i]], ref=β, ls_mode="exact")}
#' @export
multiRun <- function(fargs, estimParams,
- prepareArgs = function(x) x, N=10, ncores=3, agg=lapply, verbose=FALSE)
+ prepareArgs = function(x
,i
) x, N=10, ncores=3, agg=lapply, verbose=FALSE)
{
if (!is.list(fargs))
stop("fargs: list")
{
if (!is.list(fargs))
stop("fargs: list")
@@
-95,7
+98,7
@@
multiRun <- function(fargs, estimParams,
estimParamAtIndex <- function(index)
{
estimParamAtIndex <- function(index)
{
- fargs <- prepareArgs(fargs)
+ fargs <- prepareArgs(fargs
, index
)
if (verbose)
cat("Run ",index,"\n")
lapply(seq_along(estimParams), function(i) {
if (verbose)
cat("Run ",index,"\n")
lapply(seq_along(estimParams), function(i) {