| 1 | generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, |
| 2 | rank = c(1,2,4)) |
| 3 | { |
| 4 | tau = 1e-6 |
| 5 | pi = rep(1.0/k, k) |
| 6 | rho = array(dim=c(m,m,k)) |
| 7 | for(i in 1:k) |
| 8 | rho[,,i] = diag(1,m) |
| 9 | require(valse) |
| 10 | xy = valse:::generateXYdefault(n, p, m, k) |
| 11 | |
| 12 | testFolder = "data/" |
| 13 | dir.create(testFolder, showWarnings=FALSE, mode="0755") |
| 14 | #save inputs |
| 15 | write.table(as.double(rho), paste(testFolder,"rho",sep=""), |
| 16 | row.names=F, col.names=F) |
| 17 | write.table(as.double(pi), paste(testFolder,"pi",sep=""), |
| 18 | row.names=F, col.names=F) |
| 19 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), |
| 20 | row.names=F, col.names=F) |
| 21 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), |
| 22 | row.names=F, col.names=F) |
| 23 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), |
| 24 | row.names=F, col.names=F) |
| 25 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), |
| 26 | row.names=F, col.names=F) |
| 27 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), |
| 28 | row.names=F, col.names=F) |
| 29 | write.table(as.integer(rank), paste(testFolder,"rank",sep=""), |
| 30 | row.names=F, col.names=F) |
| 31 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensxyns",sep=""), |
| 32 | row.names=F, col.names=F) |
| 33 | |
| 34 | res = EMGrank(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank) |
| 35 | |
| 36 | #save output |
| 37 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F) |
| 38 | write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F) |
| 39 | } |