-generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, L=12, mini=5,
+generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, k=3, L=12, mini=5,
maxi=10, gamma=1.0, rangmin=3, rangmax=6)
{
- testFolder = "data/"
- dir.create(testFolder, showWarnings=FALSE, mode="0755")
-
tau = 1e-6
- pi = matrix(0, k,L)
- for(i in 1:L){
- pi[,i] = rep(1.0/k, k)
- }
- rho = array(0, dim=c(m,m,k,L))
- for(l in 1:L){
- for(r in 1:k){
+ pi = matrix(1./k, nrow=k, ncol=L)
+ rho = array(dim=c(m,m,k,L))
+ for (l in 1:L)
+ {
+ for (r in 1:k)
rho[,,r,l] = diag(1,m)
- }
}
+ A1 = matrix(seq_len(p), nrow=p, ncol=L)
require(valse)
- io = valse:::generateIOdefault(n, p, m, k)
- A1 = matrix(0,p,L)
- for(i in 1:L){
- A1[,i] = seq(1,p)
- }
+ xy = valse:::generateXYdefault(n, p, m, k)
+ testFolder = "data/"
+ dir.create(testFolder, showWarnings=FALSE, mode="0755")
#save inputs
- write.table(as.double(rho),paste(testFolder,"rho",sep=""),
- row.names=F, col.names=F)
write.table(as.double(pi), paste(testFolder,"pi",sep=""),
row.names=F, col.names=F)
+ write.table(as.double(rho),paste(testFolder,"rho",sep=""),
+ row.names=F, col.names=F)
write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
row.names=F, col.names=F)
write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
row.names=F, col.names=F)
- write.table(as.double(io$X), paste(testFolder,"X",sep=""),
+ write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
row.names=F, col.names=F)
- write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
+ write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
row.names=F, col.names=F)
write.table(as.double(tau),paste(testFolder,"tau",sep=""),
row.names=F, col.names=F)
row.names=F, col.names=F)
write.table(as.integer(rangmax),paste(testFolder,"rangmax",sep=""),
row.names=F, col.names=F)
- write.table(as.integer(c(n,p,m,k)),paste(testFolder,"dimensions",sep=""),
+ write.table(as.integer(c(n,p,m,k,L)),paste(testFolder,"dimensions",sep=""),
row.names=F, col.names=F)
- res = constructionModelesLassoRank(pi,rho,mini,maxi,X,Y,tau,A1,rangmin,rangmax)
+ res = constructionModelesLassoRank(pi,rho,mini,maxi,xy$X,xy$Y,tau,A1,rangmin,rangmax)
#save output
write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)