#auxiliary to test diagonality
.computeMuCheckDiag = function(X, Y, K, jd_method, β_ref)
{
- d = ncol(X)
+ d <- ncol(X)
#TODO: redundant code, same as computeMu() main method. Comments are stripped
- M3 = .Moments_M3(X,Y)
- M2_t = array(dim=c(d,d,d))
+ M3 <- .Moments_M3(X,Y)
+ M2_t <- array(dim=c(d,d,d))
for (i in 1:d)
{
- ρ = c(rep(0,i-1),1,rep(0,d-i))
- M2_t[,,i] = .T_I_I_w(M3,ρ)
+ ρ <- c(rep(0,i-1),1,rep(0,d-i))
+ M2_t[,,i] <- .T_I_I_w(M3,ρ)
}
- jd = jointDiag::ajd(M2_t, method=jd_method)
- V = if (jd_method=="uwedge") jd$B else solve(jd$A)
- M2_t = array(dim=c(d,d,K))
+ jd <- jointDiag::ajd(M2_t, method=jd_method)
+ V <- if (jd_method=="uwedge") jd$B else solve(jd$A)
+ M2_t <- array(dim=c(d,d,K))
for (i in 1:K)
- M2_t[,,i] = .T_I_I_w(M3,V[,i])
+ M2_t[,,i] <- .T_I_I_w(M3,V[,i])
#END of computeMu() code
- max_error = 0.5 #TODO: tune ?
- invβ = MASS::ginv(β_ref)
+ max_error <- 1.0 #TODO: tune ?
+ invβ <- MASS::ginv(β_ref)
for (i in 1:K)
{
- shouldBeDiag = invβ %*% M2_t[,,i] %*% t(invβ)
+ shouldBeDiag <- invβ %*% M2_t[,,i] %*% t(invβ)
expect_that(
mean( abs(shouldBeDiag[upper.tri(shouldBeDiag) | lower.tri(shouldBeDiag)]) ),
is_less_than(max_error) )
test_that("'jedi' and 'uwedge' joint-diagonalization methods return a correct matrix",
{
- n = 10000
- d_K = list( c(2,2), c(5,3), c(20,13) )
+ n <- 10000
+ d_K <- list( c(2,2), c(5,3), c(20,13) )
for (dk_index in 1:length(d_K))
{
- d = d_K[[dk_index]][1]
- K = d_K[[dk_index]][2]
+ d <- d_K[[dk_index]][1]
+ K <- d_K[[dk_index]][2]
#NOTE: sometimes large errors if pr is not balanced enough (e.g. random);
# same note for β. However we could be more random than that...
- β_ref = rbind(diag(K),matrix(0,nrow=d-K,ncol=K))
- io = generateSampleIO(n, p=rep(1/K,K-1), β=β_ref, rep(0,K), link="logit")
+ β_ref <- rbind(diag(K),matrix(0,nrow=d-K,ncol=K))
+ io <- generateSampleIO(n, p=rep(1/K,K-1), β=β_ref, rep(0,K), link="logit")
.computeMuCheckDiag(io$X, io$Y, K, jd_method="uwedge", β_ref)
#TODO: some issues with jedi method (singular system)
#.computeMuCheckDiag(io$X, io$Y, K, jd_method="jedi", β_ref)