#include <Rdefines.h>
#include "EMGLLF.h"
+// See comments in src/sources/EMGLLF.c and R/EMGLLF.R (wrapper)
SEXP EMGLLF(
SEXP phiInit_,
SEXP rhoInit_,
SEXP lambda_,
SEXP X_,
SEXP Y_,
- SEXP tau_
+ SEXP eps_
) {
// Get matrices dimensions
int n = INTEGER(getAttrib(X_, R_DimSymbol))[0];
int maxi = INTEGER_VALUE(maxi_);
double gamma = NUMERIC_VALUE(gamma_);
double lambda = NUMERIC_VALUE(lambda_);
- double tau = NUMERIC_VALUE(tau_);
+ double eps = NUMERIC_VALUE(eps_);
// Get pointers from SEXP arrays ; WARNING: by columns !
double* phiInit = REAL(phiInit_);
// OUTPUTS //
/////////////
- SEXP phi, rho, pi, LLF, S, dimPhiS, dimRho;
+ SEXP phi, rho, pi, LLF, S, affec, dimPhiS, dimRho;
PROTECT(dimPhiS = allocVector(INTSXP, 3));
int* pDimPhiS = INTEGER(dimPhiS);
pDimPhiS[0] = p; pDimPhiS[1] = m; pDimPhiS[2] = k;
PROTECT(phi = allocArray(REALSXP, dimPhiS));
PROTECT(rho = allocArray(REALSXP, dimRho));
PROTECT(pi = allocVector(REALSXP, k));
- PROTECT(LLF = allocVector(REALSXP, maxi-mini+1));
+ PROTECT(LLF = allocVector(REALSXP, maxi));
PROTECT(S = allocArray(REALSXP, dimPhiS));
+ PROTECT(affec = allocVector(INTSXP, n));
double *pPhi=REAL(phi), *pRho=REAL(rho), *pPi=REAL(pi), *pLLF=REAL(LLF), *pS=REAL(S);
+ int *pAffec=INTEGER(affec);
////////////////////
// Call to EMGLLF //
////////////////////
- EMGLLF_core(phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,lambda,X,Y,tau,
- pPhi,pRho,pPi,pLLF,pS,
+ EMGLLF_core(phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,lambda,X,Y,eps,
+ pPhi,pRho,pPi,pLLF,pS,pAffec,
n,p,m,k);
// Build list from OUT params and return it
SEXP listParams, listNames;
- PROTECT(listParams = allocVector(VECSXP, 5));
- char* lnames[5] = {"phi", "rho", "pi", "LLF", "S"}; //lists labels
- PROTECT(listNames = allocVector(STRSXP,5));
- for (int i=0; i<5; i++)
+ int nouts = 6;
+ PROTECT(listParams = allocVector(VECSXP, nouts));
+ char* lnames[6] = {"phi", "rho", "pi", "LLF", "S", "affec"}; //lists labels
+ PROTECT(listNames = allocVector(STRSXP,nouts));
+ for (int i=0; i<nouts; i++)
SET_STRING_ELT(listNames,i,mkChar(lnames[i]));
setAttrib(listParams, R_NamesSymbol, listNames);
SET_VECTOR_ELT(listParams, 0, phi);
SET_VECTOR_ELT(listParams, 2, pi);
SET_VECTOR_ELT(listParams, 3, LLF);
SET_VECTOR_ELT(listParams, 4, S);
+ SET_VECTOR_ELT(listParams, 5, affec);
- UNPROTECT(9);
+ UNPROTECT(10);
return listParams;
}