-generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)){
+generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5,
+ maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
+{
testFolder = "data/"
dir.create(testFolder, showWarnings=FALSE, mode="0755")
- delimiter = " "
-
- #Generate phiInit,piInit,...
+
require(valse)
params = valse:::basic_Init_Parameters(n, p, m, k)
-
- #save inputs
- write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter)
- write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter)
- write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter)
- write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter)
- write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
- write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
- write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter)
- write.table(paste(testFolder,"lambda",sep=""), lambda, sep=delimiter)
- write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter)
- write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter)
- write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
- write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
-
A2 = array(0, dim=c(p, m+1, L))
A1 = array(0, dim=c(p, m+1, L))
- for(i in 1:L){
- A2[,1,i] = seq(1,p)
- A2[,2,i] = seq(1,5)
- A1[,1, i] = seq(1,p)
- A1[,2,i] = seq(1,5)
+ for (i in 1:L)
+ {
+ A2[,1,i] = seq_len(p)
+ A2[,2,i] = seq_len(5)
+ A1[,1,i] = seq_len(p)
+ A1[,2,i] = seq_len(5)
}
-
- #Generate X and Y
- generateIOdef = generateIOdefault(n, p, m, k)
- construct_LME = constructionModelesLassoMLE(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,gamma,glambda,generateIOdef$X,generateIOdef$Y,seuil,tau,A1,A2)
- phi = construct_LME$phi
- rho = construct_LME$rho
- pi = construct_LME$pi
- lvraisemblance = construct_LME$lvraisemblance
-
+ io = generateIOdefault(n, p, m, k)
+
+ #save inputs
+ write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(io$X), paste(testFolder,"X",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+ row.names=F, col.names=F)
+
+ res = constructionModelesLassoMLE(
+ params$phiInit,params$rhoInit,params$piInit,params$gamInit,
+ mini,maxi,gamma,glambda,io$X,io$Y,seuil,tau,A1,A2)
+
#save output
- write.table(paste(testFolder,"phi",sep=""), construct_LME$phi, sep=delimiter)
- write.table(paste(testFolder,"rho",sep=""), construct_LME$rho, sep=delimiter)
- write.table(paste(testFolder,"pi",sep=""), construct_LME$pi, sep=delimiter)
- write.table(paste(testFolder,"lvraisemblance",sep=""), construct_LME$lvraisemblance, sep=delimiter)
+ write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
+ write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
+ write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
+ write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
}