generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
rank = c(1,2,4))
{
- testFolder = "data/"
- dir.create(testFolder, showWarnings=FALSE, mode="0755")
-
tau = 1e-6
pi = rep(1.0/k, k)
- rho = array(0, dim=c(m,m,k))
- for(i in 1:k){
+ rho = array(dim=c(m,m,k))
+ for(i in 1:k)
rho[,,i] = diag(1,m)
- }
require(valse)
- io = valse:::generateIOdefault(n, p, m, k)
+ xy = valse:::generateXYdefault(n, p, m, k)
+ testFolder = "data/"
+ dir.create(testFolder, showWarnings=FALSE, mode="0755")
#save inputs
write.table(as.double(rho), paste(testFolder,"rho",sep=""),
row.names=F, col.names=F)
row.names=F, col.names=F)
write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
row.names=F, col.names=F)
- write.table(as.double(io$X), paste(testFolder,"X",sep=""),
+ write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
row.names=F, col.names=F)
- write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
+ write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
row.names=F, col.names=F)
write.table(as.double(tau), paste(testFolder,"tau",sep=""),
row.names=F, col.names=F)
write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
row.names=F, col.names=F)
- write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+ write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensxyns",sep=""),
row.names=F, col.names=F)
- res = EMGrank(pi,rho,mini,maxi,io$X,io$Y,tau,rank)
+ res = EMGrank(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
#save output
write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)