-generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, L=12, mini=5, maxi=10, gamma=1.0, rangmin=3, rangmax=6){
- testFolder = "data/"
- dir.create(testFolder, showWarnings=FALSE, mode="0755")
- delimiter = " "
-
+source("helpers/constructionModelesLassoRank.R")
+
+generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, k=3, L=12, mini=5,
+ maxi=10, gamma=1.0, rangmin=3, rangmax=6)
+{
tau = 1e-6
-
-
- pi = matrix(0, k,L)
- for(i in 1:L){
- pi[,i] = rep(1.0/k, k)
- }
- rho = array(0, dim=c(m,m,k,L))
- for(l in 1:L){
- for(r in 1:k){
+ pi = matrix(1./k, nrow=k, ncol=L)
+ rho = array(dim=c(m,m,k,L))
+ for (l in 1:L)
+ {
+ for (r in 1:k)
rho[,,r,l] = diag(1,m)
- }
}
- #Generate X and Y
+ A1 = matrix(seq_len(p), nrow=p, ncol=L)
require(valse)
- generateIOdef = valse:::generateIOdefault(n, p, m, k)
-
- A1 = matrix(0,p,L)
- for(i in 1:L){
- A1[,i] = seq(1,p)
- }
+ xy = valse:::generateXYdefault(n, p, m, k)
+
+ testFolder = "../data/"
+ dir.create(testFolder, showWarnings=FALSE, mode="0755")
#save inputs
- write.table(paste(testFolder,"rho",sep=""), rho, sep=delimiter)
- write.table(paste(testFolder,"pi",sep=""), pi, sep=delimiter)
- write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
- write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
- write.table(paste(testFolder,"X",sep=""), generateIOdef$X sep=delimiter)
- write.table(paste(testFolder,"Y",sep=""), generateIOdef$Y, sep=delimiter)
- write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
- write.table(paste(testFolder,"A1",sep=""), A1, sep=delimiter)
- write.table(paste(testFolder,"rangmin",sep=""), rangmin, sep=delimiter)
- write.table(paste(testFolder,"rangmax",sep=""), rangmax, sep=delimiter)
- write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
-
- construct = constructionModelesLassoRank(pi,rho,mini,maxi,X,Y,tau,A1,rangmin,rangmax))
-
+ write.table(as.double(pi), paste(testFolder,"pi",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(rho),paste(testFolder,"rho",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(tau),paste(testFolder,"tau",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(A1),paste(testFolder,"A1",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(rangmin),paste(testFolder,"rangmin",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(rangmax),paste(testFolder,"rangmax",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(c(n,p,m,k,L)),paste(testFolder,"dimensions",sep=""),
+ row.names=F, col.names=F)
+
+ res = constructionModelesLassoRank(pi,rho,mini,maxi,xy$X,xy$Y,tau,A1,rangmin,rangmax)
+
#save output
- write.table(paste(testFolder,"phi",sep=""), construct$phi, sep=delimiter)
- write.table(paste(testFolder,"lvraisemblance",sep=""), construct$lvraisemblance, sep=delimiter)
-
+ write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
+ write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
}