[epclust.git] / epclust / tests / testthat / test-computeSynchrones.R

context("computeSynchrones")

test_that("computeSynchrones behave as expected",
{
	# Generate 300 sinusoïdal series of 3 kinds: all series of indices == 0 mod 3 are the same
	# (plus noise), all series of indices == 1 mod 3 are the same (plus noise) ...
	n = 300
	x = seq(0,9.5,0.1)
	L = length(x) #96 1/4h
	K = 3
	s1 = cos(x)
	s2 = sin(x)
	s3 = c( s1[1:(L%/%2)] , s2[(L%/%2+1):L] )
	#sum((s1-s2)^2) == 96
	#sum((s1-s3)^2) == 58
	#sum((s2-s3)^2) == 38
	s = list(s1, s2, s3)
	series = matrix(nrow=L, ncol=n)
	for (i in seq_len(n))
		series[,i] = s[[I(i,K)]] + rnorm(L,sd=0.01)

	getRefSeries = function(indices) {
		indices = indices[indices <= n]
		if (length(indices)>0) as.matrix(series[,indices]) else NULL
	}

	synchrones = computeSynchrones(bigmemory::as.big.matrix(cbind(s1,s2,s3)), getRefSeries,
		n, 100, verbose=TRUE, parll=FALSE)

	expect_equal(dim(synchrones), c(L,K))
	for (i in 1:K)
	{
		# Synchrones are (for each medoid) sums of closest curves.
		# Here, we expect exactly 100 curves of each kind to be assigned respectively to
		# synchrone 1, 2 and 3 => division by 100 should be very close to the ref curve
		expect_equal(synchrones[,i]/100, s[[i]], tolerance=0.01)
	}
})
Commit	Line	Data
40f12a2f BA	1	context("computeSynchrones")
	2
	3	test_that("computeSynchrones behave as expected",
	4	{
	5	# Generate 300 sinusoïdal series of 3 kinds: all series of indices == 0 mod 3 are the same
	6	# (plus noise), all series of indices == 1 mod 3 are the same (plus noise) ...
	7	n = 300
	8	x = seq(0,9.5,0.1)
	9	L = length(x) #96 1/4h
	10	K = 3
	11	s1 = cos(x)
	12	s2 = sin(x)
	13	s3 = c( s1[1:(L%/%2)] , s2[(L%/%2+1):L] )
	14	#sum((s1-s2)^2) == 96
	15	#sum((s1-s3)^2) == 58
	16	#sum((s2-s3)^2) == 38
	17	s = list(s1, s2, s3)
	18	series = matrix(nrow=L, ncol=n)
	19	for (i in seq_len(n))
	20	series[,i] = s[[I(i,K)]] + rnorm(L,sd=0.01)
	21
	22	getRefSeries = function(indices) {
	23	indices = indices[indices <= n]
	24	if (length(indices)>0) as.matrix(series[,indices]) else NULL
	25	}
	26
	27	synchrones = computeSynchrones(bigmemory::as.big.matrix(cbind(s1,s2,s3)), getRefSeries,
	28	n, 100, verbose=TRUE, parll=FALSE)
	29
	30	expect_equal(dim(synchrones), c(L,K))
	31	for (i in 1:K)
	32	{
	33	# Synchrones are (for each medoid) sums of closest curves.
	34	# Here, we expect exactly 100 curves of each kind to be assigned respectively to
	35	# synchrone 1, 2 and 3 => division by 100 should be very close to the ref curve
	36	expect_equal(synchrones[,i]/100, s[[i]], tolerance=0.01)
	37	}
	38	})