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1 | generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)){ |
2 | testFolder = "data/" | |
3 | dir.create(testFolder, showWarnings=FALSE, mode="0755") | |
4 | delimiter = " " | |
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5 | |
6 | #Generate phiInit,piInit,... | |
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7 | require(valse) |
8 | params = valse:::basic_Init_Parameters(n, p, m, k) | |
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10 | #save inputs |
11 | write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter) | |
12 | write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter) | |
13 | write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter) | |
14 | write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter) | |
15 | write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter) | |
16 | write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter) | |
17 | write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter) | |
18 | write.table(paste(testFolder,"lambda",sep=""), lambda, sep=delimiter) | |
19 | write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter) | |
20 | write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter) | |
21 | write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter) | |
22 | write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter) | |
23 | ||
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24 | A2 = array(0, dim=c(p, m+1, L)) |
25 | A1 = array(0, dim=c(p, m+1, L)) | |
26 | for(i in 1:L){ | |
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27 | A2[,1,i] = seq(1,p) |
28 | A2[,2,i] = seq(1,5) | |
29 | A1[,1, i] = seq(1,p) | |
30 | A1[,2,i] = seq(1,5) | |
dc425209 | 31 | } |
dc425209 | 32 | |
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33 | #Generate X and Y |
34 | generateIOdef = generateIOdefault(n, p, m, k) | |
35 | construct_LME = constructionModelesLassoMLE(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,gamma,glambda,generateIOdef$X,generateIOdef$Y,seuil,tau,A1,A2) | |
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36 | phi = construct_LME$phi |
37 | rho = construct_LME$rho | |
38 | pi = construct_LME$pi | |
39 | lvraisemblance = construct_LME$lvraisemblance | |
40 | ||
41 | #save output | |
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42 | write.table(paste(testFolder,"phi",sep=""), construct_LME$phi, sep=delimiter) |
43 | write.table(paste(testFolder,"rho",sep=""), construct_LME$rho, sep=delimiter) | |
44 | write.table(paste(testFolder,"pi",sep=""), construct_LME$pi, sep=delimiter) | |
45 | write.table(paste(testFolder,"lvraisemblance",sep=""), construct_LME$lvraisemblance, sep=delimiter) | |
dc425209 | 46 | } |