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cb51adb8 BA |
1 | #include <R.h> |
2 | #include <Rdefines.h> | |
8e92c49c | 3 | #include "EMGLLF.h" |
cb51adb8 | 4 | |
4fed76cc | 5 | // See comments in src/sources/EMGLLF.c and R/EMGLLF.R (wrapper) |
cb51adb8 | 6 | SEXP EMGLLF( |
4cab944a BA |
7 | SEXP phiInit_, |
8 | SEXP rhoInit_, | |
9 | SEXP piInit_, | |
10 | SEXP gamInit_, | |
11 | SEXP mini_, | |
12 | SEXP maxi_, | |
13 | SEXP gamma_, | |
14 | SEXP lambda_, | |
15 | SEXP X_, | |
16 | SEXP Y_, | |
17 | SEXP tau_ | |
cb51adb8 | 18 | ) { |
cb51adb8 | 19 | // Get matrices dimensions |
4cab944a | 20 | int n = INTEGER(getAttrib(X_, R_DimSymbol))[0]; |
8e92c49c | 21 | SEXP dim = getAttrib(phiInit_, R_DimSymbol); |
4cab944a BA |
22 | int p = INTEGER(dim)[0]; |
23 | int m = INTEGER(dim)[1]; | |
24 | int k = INTEGER(dim)[2]; | |
cb51adb8 BA |
25 | |
26 | //////////// | |
27 | // INPUTS // | |
28 | //////////// | |
29 | ||
4cab944a BA |
30 | // get scalar parameters |
31 | int mini = INTEGER_VALUE(mini_); | |
32 | int maxi = INTEGER_VALUE(maxi_); | |
33 | double gamma = NUMERIC_VALUE(gamma_); | |
34 | double lambda = NUMERIC_VALUE(lambda_); | |
35 | double tau = NUMERIC_VALUE(tau_); | |
36 | ||
37 | // Get pointers from SEXP arrays ; WARNING: by columns ! | |
38 | double* phiInit = REAL(phiInit_); | |
39 | double* rhoInit = REAL(rhoInit_); | |
40 | double* piInit = REAL(piInit_); | |
41 | double* gamInit = REAL(gamInit_); | |
42 | double* X = REAL(X_); | |
43 | double* Y = REAL(Y_); | |
cb51adb8 BA |
44 | |
45 | ///////////// | |
46 | // OUTPUTS // | |
47 | ///////////// | |
48 | ||
8be79c46 | 49 | SEXP phi, rho, pi, LLF, S, affec, dimPhiS, dimRho; |
4cab944a BA |
50 | PROTECT(dimPhiS = allocVector(INTSXP, 3)); |
51 | int* pDimPhiS = INTEGER(dimPhiS); | |
52 | pDimPhiS[0] = p; pDimPhiS[1] = m; pDimPhiS[2] = k; | |
53 | PROTECT(dimRho = allocVector(INTSXP, 3)); | |
54 | int* pDimRho = INTEGER(dimRho); | |
55 | pDimRho[0] = m; pDimRho[1] = m; pDimRho[2] = k; | |
56 | PROTECT(phi = allocArray(REALSXP, dimPhiS)); | |
57 | PROTECT(rho = allocArray(REALSXP, dimRho)); | |
58 | PROTECT(pi = allocVector(REALSXP, k)); | |
59 | PROTECT(LLF = allocVector(REALSXP, maxi-mini+1)); | |
60 | PROTECT(S = allocArray(REALSXP, dimPhiS)); | |
8be79c46 | 61 | PROTECT(affec = allocVector(INTSXP, n)); |
8e92c49c | 62 | double *pPhi=REAL(phi), *pRho=REAL(rho), *pPi=REAL(pi), *pLLF=REAL(LLF), *pS=REAL(S); |
8be79c46 | 63 | int *pAffec=INTEGER(affec); |
cb51adb8 BA |
64 | |
65 | //////////////////// | |
66 | // Call to EMGLLF // | |
67 | //////////////////// | |
68 | ||
09ab3c16 | 69 | EMGLLF_core(phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,lambda,X,Y,tau, |
8be79c46 | 70 | pPhi,pRho,pPi,pLLF,pS,pAffec, |
cb51adb8 | 71 | n,p,m,k); |
cb51adb8 | 72 | |
4cab944a BA |
73 | // Build list from OUT params and return it |
74 | SEXP listParams, listNames; | |
8be79c46 BA |
75 | int nouts = 6; |
76 | PROTECT(listParams = allocVector(VECSXP, nouts)); | |
77 | char* lnames[6] = {"phi", "rho", "pi", "LLF", "S", "affec"}; //lists labels | |
78 | PROTECT(listNames = allocVector(STRSXP,nouts)); | |
79 | for (int i=0; i<nouts; i++) | |
4cab944a BA |
80 | SET_STRING_ELT(listNames,i,mkChar(lnames[i])); |
81 | setAttrib(listParams, R_NamesSymbol, listNames); | |
09ab3c16 BA |
82 | SET_VECTOR_ELT(listParams, 0, phi); |
83 | SET_VECTOR_ELT(listParams, 1, rho); | |
84 | SET_VECTOR_ELT(listParams, 2, pi); | |
4cab944a | 85 | SET_VECTOR_ELT(listParams, 3, LLF); |
09ab3c16 | 86 | SET_VECTOR_ELT(listParams, 4, S); |
8be79c46 | 87 | SET_VECTOR_ELT(listParams, 5, affec); |
cb51adb8 | 88 | |
8be79c46 | 89 | UNPROTECT(10); |
4cab944a | 90 | return listParams; |
cb51adb8 | 91 | } |