X-Git-Url: https://git.auder.net/?p=valse.git;a=blobdiff_plain;f=test%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGLLF.R;fp=test%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGLLF.R;h=fe8f847f66589b07a7b0de324ce90e768cd113b7;hp=0000000000000000000000000000000000000000;hb=f87ff0f5116c0c1c59c5608e46563ff0f79e5d43;hpb=53fa233d8fbeaf4d51a4874ba69d8472d01d04ba

diff --git a/test/generate_test_data/generateRunSaveTest_EMGLLF.R b/test/generate_test_data/generateRunSaveTest_EMGLLF.R
new file mode 100644
index 0000000..fe8f847
--- /dev/null
+++ b/test/generate_test_data/generateRunSaveTest_EMGLLF.R
@@ -0,0 +1,48 @@
+source("EMGLLF.R")
+
+generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
+	gamma=1., lambda=0.5, tau=1e-6)
+{
+	testFolder = "../data/"
+	dir.create(testFolder, showWarnings=FALSE, mode="0755")
+
+	require(valse)
+	params = valse:::basicInitParameters(n, p, m, k)
+	xy = valse:::generateXYdefault(n, p, m, k)
+
+	#save inputs
+	write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+		row.names=F, col.names=F)
+
+	res = EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
+		gamma,lambda,xy$X,xy$Y,tau)
+
+	#save outputs
+	write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F)
+}