X-Git-Url: https://git.auder.net/?p=valse.git;a=blobdiff_plain;f=test%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGLLF.R;fp=test%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGLLF.R;h=0000000000000000000000000000000000000000;hp=8fe1f33bb07def6a41d538ecd1c392c540cddc31;hb=aa480ac1fef50618978307a4df2cf9da1e285abc;hpb=321e13a991a5a0e6c97225fdca436870e5e805d1

diff --git a/test/generate_test_data/generateRunSaveTest_EMGLLF.R b/test/generate_test_data/generateRunSaveTest_EMGLLF.R
deleted file mode 100644
index 8fe1f33..0000000
--- a/test/generate_test_data/generateRunSaveTest_EMGLLF.R
+++ /dev/null
@@ -1,50 +0,0 @@
-source("EMGLLF.R")
-source("helper.R")
-
-generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
-	gamma=1., lambda=0.5, tau=1e-6)
-{
-	testFolder = "../data/"
-	dir.create(testFolder, showWarnings=FALSE, mode="0755")
-
-	require(valse)
-	params = basicInitParameters(n, p, m, k)
-	xy = generateXYdefault(n, p, m, k)
-
-	#save inputs
-	write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(tau), paste(testFolder,"tau",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
-		row.names=F, col.names=F)
-
-	res = EMGLLF_R(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
-		gamma,lambda,xy$X,xy$Y,tau)
-
-	#save outputs
-	write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
-	write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
-	write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
-	write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
-	write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F)
-	write.table(as.integer(res$affec), paste(testFolder,"affec",sep=""), row.names=F, col.names=F)
-}