X-Git-Url: https://git.auder.net/?p=valse.git;a=blobdiff_plain;f=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGrank.R;h=99da9bc3a9b6161e35d320650d458b1d9c4fdda0;hp=3740b58fcd77781455c1b4ddbf8c7374822416e6;hb=31463ab809c0195273ff2760606ea65361d721ab;hpb=c3bc47052f3ccb659659c59a82e9a99ea842398d

diff --git a/src/test/generate_test_data/generateRunSaveTest_EMGrank.R b/src/test/generate_test_data/generateRunSaveTest_EMGrank.R
index 3740b58..99da9bc 100644
--- a/src/test/generate_test_data/generateRunSaveTest_EMGrank.R
+++ b/src/test/generate_test_data/generateRunSaveTest_EMGrank.R
@@ -1,18 +1,18 @@
+source("EMGrank.R")
+
 generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
 	rank = c(1,2,4))
 {
-  testFolder = "data/"
-  dir.create(testFolder, showWarnings=FALSE, mode="0755")
-
   tau = 1e-6
   pi = rep(1.0/k, k)
-  rho = array(0, dim=c(m,m,k))
-  for(i in 1:k){
+  rho = array(dim=c(m,m,k))
+  for(i in 1:k)
     rho[,,i] = diag(1,m)
-  }
 	require(valse)
-  io = valse:::generateIOdefault(n, p, m, k)
+  xy = valse:::generateXYdefault(n, p, m, k)
 
+  testFolder = "../data/"
+  dir.create(testFolder, showWarnings=FALSE, mode="0755")
   #save inputs
   write.table(as.double(rho), paste(testFolder,"rho",sep=""),
 		row.names=F, col.names=F)
@@ -22,9 +22,9 @@ generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
 		row.names=F, col.names=F)
   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
 		row.names=F, col.names=F)
-  write.table(as.double(io$X), paste(testFolder,"X",sep=""),
+  write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
 		row.names=F, col.names=F)
-  write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
+  write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
 		row.names=F, col.names=F)
   write.table(as.double(tau), paste(testFolder,"tau",sep=""),
 		row.names=F, col.names=F)
@@ -33,7 +33,7 @@ generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
   write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
 		row.names=F, col.names=F)
 
-  res = EMGrank(pi,rho,mini,maxi,io$X,io$Y,tau,rank)
+  res = EMGrank(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
 
   #save output
   write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)