X-Git-Url: https://git.auder.net/?p=valse.git;a=blobdiff_plain;f=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGLLF.R;h=fe8f847f66589b07a7b0de324ce90e768cd113b7;hp=60ac6c57548453042a8dc57368503e8bd45c41a8;hb=31463ab809c0195273ff2760606ea65361d721ab;hpb=99b372aebd8b00775c40b16c512d9e59394a8c14

diff --git a/src/test/generate_test_data/generateRunSaveTest_EMGLLF.R b/src/test/generate_test_data/generateRunSaveTest_EMGLLF.R
index 60ac6c5..fe8f847 100644
--- a/src/test/generate_test_data/generateRunSaveTest_EMGLLF.R
+++ b/src/test/generate_test_data/generateRunSaveTest_EMGLLF.R
@@ -1,33 +1,48 @@
+source("EMGLLF.R")
+
 generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
 	gamma=1., lambda=0.5, tau=1e-6)
 {
-	testFolder = "data/"
+	testFolder = "../data/"
 	dir.create(testFolder, showWarnings=FALSE, mode="0755")
-	delimiter = " "
+
+	require(valse)
+	params = valse:::basicInitParameters(n, p, m, k)
+	xy = valse:::generateXYdefault(n, p, m, k)
 
 	#save inputs
-	params = basicInitParameters(n, p, m, k)
-	io = generateIOdefault(n, p, m, k)
-	write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter);
-	write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter);
-	write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter);
-	write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter);
-	write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter);
-	write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter);
-	write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter);
-	write.table(paste(testFolder,"lambda",sep=""), lambda, sep=delimiter);
-	write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter);
-	write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter);
-	write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter);
-	write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter);
+	write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+		row.names=F, col.names=F)
+	write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+		row.names=F, col.names=F)
 
 	res = EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
-		gamma,lambda,io$X,io$Y,tau);
+		gamma,lambda,xy$X,xy$Y,tau)
 
 	#save outputs
-	write.table(paste(testFolder,"phi",sep=""), res$phi, sep=delimiter);
-	write.table(paste(testFolder,"rho",sep=""), res$rho, sep=delimiter);
-	write.table(paste(testFolder,"pi",sep=""), res$pi, sep=delimiter);
-	write.table(paste(testFolder,"LLF",sep=""), res$LLF, sep=delimiter);
-	write.table(paste(testFolder,"S",sep=""), res$S, sep=delimiter);
+	write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F, col.names=F)
+	write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F)
 }