X-Git-Url: https://git.auder.net/?p=valse.git;a=blobdiff_plain;f=pkg%2FR%2Fmain.R;h=d29fe699a3b3a58430adce7d35cba545ad99dd1d;hp=632d90ba6203aba80f57ca0719ff6a87cfd7ef0f;hb=82718d11dc4451896afa25328970ca2029925ae1;hpb=f7ac8e154ed78624db1a9992adb5576cae499989 diff --git a/pkg/R/main.R b/pkg/R/main.R index 632d90b..d29fe69 100644 --- a/pkg/R/main.R +++ b/pkg/R/main.R @@ -51,7 +51,7 @@ valse <- function(X, Y, procedure = "LassoMLE", selecMod = "DDSE", gamma = 1, mi computeModels <- function(k) { if (ncores_outer > 1) - require("valse") #nodes start with an empty environment + require("valse") #nodes start with an empty environment if (verbose) print(paste("Parameters initialization for k =", k)) @@ -123,6 +123,8 @@ valse <- function(X, Y, procedure = "LassoMLE", selecMod = "DDSE", gamma = 1, mi complexity = sumPen, contrast = -LLH) })) tableauRecap <- tableauRecap[which(tableauRecap[, 4] != Inf), ] + + if (verbose == TRUE) print(tableauRecap) modSel <- capushe::capushe(tableauRecap, n) @@ -140,26 +142,10 @@ valse <- function(X, Y, procedure = "LassoMLE", selecMod = "DDSE", gamma = 1, mi modSel@AIC_capushe$model } - - mod <- as.character(tableauRecap[indModSel, 1]) - listMod <- as.integer(unlist(strsplit(mod, "[.]"))) + listMod <- as.integer(unlist(strsplit(as.character(indModSel), "[.]"))) modelSel <- models_list[[listMod[1]]][[listMod[2]]] - - ## Affectations - Gam <- matrix(0, ncol = length(modelSel$pi), nrow = n) - for (i in 1:n) - { - for (r in 1:length(modelSel$pi)) - { - sqNorm2 <- sum((Y[i, ] %*% modelSel$rho[, , r] - X[i, ] %*% modelSel$phi[, , r])^2) - Gam[i, r] <- modelSel$pi[r] * exp(-0.5 * sqNorm2) * gdet(modelSel$rho[, , r]) - } - } - Gam <- Gam/rowSums(Gam) - modelSel$affec <- apply(Gam, 1, which.max) - modelSel$proba <- Gam modelSel$tableau <- tableauRecap - + if (plot) print(plot_valse(X, Y, modelSel, n))