X-Git-Url: https://git.auder.net/?p=valse.git;a=blobdiff_plain;f=pkg%2FR%2FEMGLLF.R;fp=pkg%2FR%2FEMGLLF.R;h=93012fb163100e8d2d4952ffb156ac94286fc1a3;hp=c30b0237166331117e183b674de943ee88b76f67;hb=04845e3300b5450629bf1a2c3344d2f9419e91a6;hpb=f32535f2bc8d50470aa87204bbd7971805dbc9ef

diff --git a/pkg/R/EMGLLF.R b/pkg/R/EMGLLF.R
index c30b023..93012fb 100644
--- a/pkg/R/EMGLLF.R
+++ b/pkg/R/EMGLLF.R
@@ -1,6 +1,9 @@
 #' EMGLLF
 #'
-#' Description de EMGLLF
+#' Run a generalized EM algorithm developped for mixture of Gaussian regression 
+#' models with variable selection by an extension of the Lasso estimator (regularization parameter lambda).
+#' Reparametrization is done to ensure invariance by homothetic transformation.
+#' It returns a collection of models, varying the number of clusters and the sparsity in the regression mean.
 #'
 #' @param phiInit an initialization for phi
 #' @param rhoInit an initialization for rho
@@ -14,13 +17,13 @@
 #' @param Y matrix of responses (of size n*m)
 #' @param eps real, threshold to say the EM algorithm converges, by default = 1e-4
 #'
-#' @return A list ... phi,rho,pi,LLF,S,affec:
-#'   phi : parametre de moyenne renormalisé, calculé par l'EM
-#'   rho : parametre de variance renormalisé, calculé par l'EM
-#'   pi : parametre des proportions renormalisé, calculé par l'EM
-#'   LLF : log vraisemblance associée à cet échantillon, pour les valeurs estimées des paramètres
-#'   S : ...
-#'   affec : ...
+#' @return A list (corresponding to the model collection) defined by (phi,rho,pi,LLF,S,affec):
+#'   phi : regression mean for each cluster
+#'   rho : variance (homothetic) for each cluster
+#'   pi : proportion for each cluster
+#'   LLF : log likelihood with respect to the training set
+#'   S : selected variables indexes
+#'   affec : cluster affectation for each observation (of the training set)
 #'
 #' @export
 EMGLLF <- function(phiInit, rhoInit, piInit, gamInit, mini, maxi, gamma, lambda,
@@ -36,8 +39,8 @@ EMGLLF <- function(phiInit, rhoInit, piInit, gamInit, mini, maxi, gamma, lambda,
   # Function in C
   n <- nrow(X)  #nombre d'echantillons
   p <- ncol(X)  #nombre de covariables
-  m <- ncol(Y)  #taille de Y (multivarié)
-  k <- length(piInit)  #nombre de composantes dans le mélange
+  m <- ncol(Y)  #taille de Y (multivarie)
+  k <- length(piInit)  #nombre de composantes dans le melange
   .Call("EMGLLF", phiInit, rhoInit, piInit, gamInit, mini, maxi, gamma, lambda,
     X, Y, eps, phi = double(p * m * k), rho = double(m * m * k), pi = double(k),
     llh = double(1), S = double(p * m * k), affec = integer(n), n, p, m, k,