X-Git-Url: https://git.auder.net/?p=valse.git;a=blobdiff_plain;f=R%2FdiscardSimilarModels.R;fp=R%2FdiscardSimilarModels.R;h=0000000000000000000000000000000000000000;hp=5f6a8c8e3f3a37aa64491030e4b9fdedaf89d89e;hb=f87ff0f5116c0c1c59c5608e46563ff0f79e5d43;hpb=53fa233d8fbeaf4d51a4874ba69d8472d01d04ba

diff --git a/R/discardSimilarModels.R b/R/discardSimilarModels.R
deleted file mode 100644
index 5f6a8c8..0000000
--- a/R/discardSimilarModels.R
+++ /dev/null
@@ -1,53 +0,0 @@
-#' Discard models which have the same relevant variables - for EMGLLF
-#'
-#' @param B1 array of relevant coefficients (of size p*m*length(gridlambda))
-#' @param B2 array of irrelevant coefficients (of size p*m*length(gridlambda))
-#' @param glambda grid of regularization parameters (vector)
-#' @param rho covariance matrix (of size m*m*K*size(gridLambda))
-#' @param pi weight parameters (of size K*size(gridLambda))
-#'
-#' @return a list with update B1, B2, glambda, rho and pi, and ind the vector of indices
-#'	of selected models.
-#' @export
-discardSimilarModels_EMGLLF = function(B1,B2,glambda,rho,pi)
-{
-	ind = c()
-	for (j in 1:length(glambda))
-	{
-		for (ll in 1:(l-1))
-		{
-			if(B1[,,l] == B1[,,ll])
-				ind = c(ind, l)
-		}
-	}
-	ind = unique(ind)
-	B1 = B1[,,-ind]
-	glambda = glambda[-ind]
-	B2 = B2[,,-ind]
-	rho = rho[,,,-ind] 
-	pi = pi[,-ind]
-
-	return (list("B1"=B1,"B2"=B2,"glambda"=glambda,"rho"=rho,"pi"=pi,"ind"=ind))
-}
-
-#' Discard models which have the same relevant variables
-#'   - for Lasso-rank procedure (focus on columns)
-#'
-#' @param B1 array of relevant coefficients (of size p*m*length(gridlambda))
-#' @param rho covariance matrix
-#' @param pi weight parameters
-#'
-#' @return a list with B1, in, rho, pi
-#' @export
-discardSimilarModels_EMGrank = function(B1,rho,pi)
-{
-	ind = c()
-	dim_B1 = dim(B1)
-	B2 = array(0,dim=c(dim_B1[1],dim_B1[2],dim_B1[3]))
-	sizeLambda=dim_B1[3]
-	glambda = rep(0,sizeLambda)
-
-	suppressmodel = discardSimilarModels_EMGLLF(B1,B2,glambda,rho,pi)
-	return (list("B1" = suppressmodel$B1, "ind" = suppressmodel$ind,
-		"rho" = suppressmodel$rho, "pi" = suppressmodel$pi))
-}