merge with remote

[valse.git] / test / test_EMGrank.R

diff --git a/test/test_EMGrank.R b/test/test_EMGrank.R
index 9aec8bb..b140e5e 100644 (file)
--- a/test/test_EMGrank.R
+++ b/test/test_EMGrank.R
@@ -4,13 +4,24 @@ testFolder = "data/"
 # NOTE: R typing is really terrible. as.double as.matrix ...and so on; don't remove.
 
 #get inputs
-#TODO
+npmk = as.matrix(read.table(paste(testFolder,"dimensions",sep="")))
+n = npmk[1]; p=npmk[2]; m=npmk[3]; k=npmk[4]
+Pi = as.double(as.matrix(read.table(paste(testFolder,"Pi",sep="")))[,])
+Rho = array(as.double(as.matrix(read.table(paste(testFolder,"Rho",sep="")))), dim=c(m,m,k))
+mini = as.integer(as.matrix(read.table(paste(testFolder,"mini",sep="")))[1])
+maxi = as.integer(as.matrix(read.table(paste(testFolder,"maxi",sep="")))[1])
+X = matrix(as.double(as.matrix(read.table(paste(testFolder,"X",sep="")))), n,p)
+Y = matrix(as.double(as.matrix(read.table(paste(testFolder,"Y",sep="")))), n,m)
+eps = as.double(as.matrix(read.table(paste(testFolder,"eps",sep="")))[1])
+rank = as.double(as.matrix(read.table(paste(testFolder,"rank",sep="")))[,])
 
 #get outputs
-#TODO
+phi = array(as.double(as.matrix(read.table(paste(testFolder,"phi",sep="")))), dim=c(p,m,k))
+LLF = as.double(as.matrix(read.table(paste(testFolder,"LLF",sep="")))[1])
 
-res = valse::EMGrank(...)
+res = valse::EMGrank(Pi,Rho,mini,maxi,X,Y,eps,rank,fast=TRUE)
 
 #compare outputs
 nd=7 #number of digits
-#TODO
+print( all(round(phi,nd) == round(res$phi,nd)) )
+print( all(round(LLF,nd) == round(res$LLF,nd)) )