Add 'fast' argument to select C code or R code

[valse.git] / test / generate_test_data / generateRunSaveTest_EMGLLF.R

diff --git a/test/generate_test_data/generateRunSaveTest_EMGLLF.R b/test/generate_test_data/generateRunSaveTest_EMGLLF.R
deleted file mode 100644 (file)
index 8fe1f33..0000000
--- a/test/generate_test_data/generateRunSaveTest_EMGLLF.R
+++ /dev/null
@@ -1,50 +0,0 @@
-source("EMGLLF.R")
-source("helper.R")
-
-generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
-       gamma=1., lambda=0.5, tau=1e-6)
-{
-       testFolder = "../data/"
-       dir.create(testFolder, showWarnings=FALSE, mode="0755")
-
-       require(valse)
-       params = basicInitParameters(n, p, m, k)
-       xy = generateXYdefault(n, p, m, k)
-
-       #save inputs
-       write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.double(tau), paste(testFolder,"tau",sep=""),
-               row.names=F, col.names=F)
-       write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
-               row.names=F, col.names=F)
-
-       res = EMGLLF_R(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
-               gamma,lambda,xy$X,xy$Y,tau)
-
-       #save outputs
-       write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
-       write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
-       write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
-       write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
-       write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F)
-       write.table(as.integer(res$affec), paste(testFolder,"affec",sep=""), row.names=F, col.names=F)
-}