generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99)) { testFolder = "data/" dir.create(testFolder, showWarnings=FALSE, mode="0755") require(valse) params = valse:::basic_Init_Parameters(n, p, m, k) A2 = array(0, dim=c(p, m+1, L)) A1 = array(0, dim=c(p, m+1, L)) for (i in 1:L) { A2[,1,i] = seq_len(p) A2[,2,i] = seq_len(5) A1[,1,i] = seq_len(p) A1[,2,i] = seq_len(5) } io = generateIOdefault(n, p, m, k) #save inputs write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""), row.names=F, col.names=F) write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""), row.names=F, col.names=F) write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""), row.names=F, col.names=F) write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""), row.names=F, col.names=F) write.table(as.integer(mini), paste(testFolder,"mini",sep=""), row.names=F, col.names=F) write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), row.names=F, col.names=F) write.table(as.double(gamma), paste(testFolder,"gamma",sep=""), row.names=F, col.names=F) write.table(as.double(lambda), paste(testFolder,"lambda",sep=""), row.names=F, col.names=F) write.table(as.double(io$X), paste(testFolder,"X",sep=""), row.names=F, col.names=F) write.table(as.double(io$Y), paste(testFolder,"Y",sep=""), row.names=F, col.names=F) write.table(as.double(tau), paste(testFolder,"tau",sep=""), row.names=F, col.names=F) write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), row.names=F, col.names=F) res = constructionModelesLassoMLE( params$phiInit,params$rhoInit,params$piInit,params$gamInit, mini,maxi,gamma,glambda,io$X,io$Y,seuil,tau,A1,A2) #save output write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F) write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F) write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F) write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F) }