vec_bin = function(X,r)
{
	Z = c()
	indice = c()
	j = 1
	for (i in 1:length(X))
	{
		if(X[i] == r)
		{
			Z[i] = 1
			indice[j] = i
			j=j+1
		} else
			Z[i] = 0
	}
	return (list(Z=Z,indice=indice))
}

initSmallEM = function(k,X,Y,tau)
{
	n = nrow(Y)
	m = ncol(Y)
	p = ncol(X)

	betaInit1 = array(0, dim=c(p,m,k,20))
	sigmaInit1 = array(0, dim = c(m,m,k,20))
	phiInit1 = array(0, dim = c(p,m,k,20))
	rhoInit1 = array(0, dim = c(m,m,k,20))
	piInit1 = matrix(0,20,k)
	gamInit1 = array(0, dim=c(n,k,20))
	LLFinit1 = list()

	require(MASS) #Moore-Penrose generalized inverse of matrix
	for(repet in 1:20)
	{
		clusters = hclust(dist(y)) #default distance : euclidean
		#cutree retourne les indices (à quel cluster indiv_i appartient) d'un clustering hierarchique
		clusterCut = cutree(clusters,k)
		Zinit1[,repet] = clusterCut

		for(r in 1:k)
		{
			Z = Zinit1[,repet]
			Z_bin = vec_bin(Z,r)
			Z_vec = Z_bin$Z #vecteur 0 et 1 aux endroits où Z==r
			Z_indice = Z_bin$indice #renvoit les indices où Z==r

			betaInit1[,,r,repet] =
				ginv(t(x[Z_indice,])%*%x[Z_indice,])%*%t(x[Z_indice,])%*%y[Z_indice,]
			sigmaInit1[,,r,repet] = diag(m)
			phiInit1[,,r,repet] = betaInit1[,,r,repet]/sigmaInit1[,,r,repet]
			rhoInit1[,,r,repet] = solve(sigmaInit1[,,r,repet])
			piInit1[repet,r] = sum(Z_vec)/n
		}

		for(i in 1:n)
		{
			for(r in 1:k)
			{
				dotProduct = (y[i,]%*%rhoInit1[,,r,repet]-x[i,]%*%phiInit1[,,r,repet]) %*%
					(y[i,]%*%rhoInit1[,,r,repet]-x[i,]%*%phiInit1[,,r,repet])
				Gam[i,r] = piInit1[repet,r]*det(rhoInit1[,,r,repet])*exp(-0.5*dotProduct)
			}
			sumGamI = sum(gam[i,])
			gamInit1[i,,repet]= Gam[i,] / sumGamI
		}

		miniInit = 10
		maxiInit = 11

		new_EMG = .Call("EMGLLF",phiInit1[,,,repet],rhoInit1[,,,repet],piInit1[repet,],
			gamInit1[,,repet],miniInit,maxiInit,1,0,x,y,tau)
		LLFEessai = new_EMG$LLF
		LLFinit1[repet] = LLFEessai[length(LLFEessai)]
	}

	b = which.max(LLFinit1)
	phiInit = phiInit1[,,,b]
	rhoInit = rhoInit1[,,,b]
	piInit = piInit1[b,]
	gamInit = gamInit1[,,b]

	return (list(phiInit=phiInit, rhoInit=rhoInit, piInit=piInit, gamInit=gamInit))
}