test/generate_test_data/generateRunSaveTest_EMGrank.R

   1 source("EMGrank.R")
   2 source("helper.R")
   3
   4 generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
   5     rank = c(1,2,4))
   6 {
   7   tau = 1e-6
   8   pi = rep(1.0/k, k)
   9   rho = array(dim=c(m,m,k))
  10   for(i in 1:k)
  11     rho[,,i] = diag(1,m)
  12     require(valse)
  13   xy = generateXYdefault(n, p, m, k)
  14
  15   testFolder = "../data/"
  16   dir.create(testFolder, showWarnings=FALSE, mode="0755")
  17   #save inputs
  18   write.table(as.double(rho), paste(testFolder,"rho",sep=""),
  19         row.names=F, col.names=F)
  20     write.table(as.double(pi), paste(testFolder,"pi",sep=""),
  21         row.names=F, col.names=F)
  22   write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  23         row.names=F, col.names=F)
  24   write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  25         row.names=F, col.names=F)
  26   write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  27         row.names=F, col.names=F)
  28   write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  29         row.names=F, col.names=F)
  30   write.table(as.double(tau), paste(testFolder,"tau",sep=""),
  31         row.names=F, col.names=F)
  32   write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
  33         row.names=F, col.names=F)
  34   write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
  35         row.names=F, col.names=F)
  36
  37   res = EMGrank_R(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
  38
  39   #save output
  40   write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)
  41   write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F)
  42 }