test/generate_test_data/generateRunSaveTest_EMGLLF.R

   1 source("EMGLLF.R")
   2 source("helper.R")
   3
   4 generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
   5     gamma=1., lambda=0.5, tau=1e-6)
   6 {
   7     testFolder = "../data/"
   8     dir.create(testFolder, showWarnings=FALSE, mode="0755")
   9
  10     require(valse)
  11     params = basicInitParameters(n, p, m, k)
  12     xy = generateXYdefault(n, p, m, k)
  13
  14     #save inputs
  15     write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
  16         row.names=F, col.names=F)
  17     write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
  18         row.names=F, col.names=F)
  19     write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
  20         row.names=F, col.names=F)
  21     write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
  22         row.names=F, col.names=F)
  23     write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  24         row.names=F, col.names=F)
  25     write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  26         row.names=F, col.names=F)
  27     write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
  28         row.names=F, col.names=F)
  29     write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
  30         row.names=F, col.names=F)
  31     write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  32         row.names=F, col.names=F)
  33     write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  34         row.names=F, col.names=F)
  35     write.table(as.double(tau), paste(testFolder,"tau",sep=""),
  36         row.names=F, col.names=F)
  37     write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
  38         row.names=F, col.names=F)
  39
  40     res = EMGLLF_R(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
  41         gamma,lambda,xy$X,xy$Y,tau)
  42
  43     #save outputs
  44     write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)
  45     write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F)
  46     write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F)
  47     write.table(as.double(res$llh), paste(testFolder,"llh",sep=""), row.names=F, col.names=F)
  48     write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F)
  49     write.table(as.integer(res$affec), paste(testFolder,"affec",sep=""), row.names=F, col.names=F)
  50 }