test/generateRunSaveTest_EMGLLF.R

   1 source("helper.R")
   2 library(valse)
   3
   4 generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
   5     gamma=1., lambda=0.5, tau=1e-6)
   6 {
   7     testFolder = "data/"
   8     dir.create(testFolder, showWarnings=FALSE, mode="0755")
   9
  10     params = basicInitParameters(n, p, m, k)
  11     xy = generateXYdefault(n, p, m, k)
  12
  13     #save inputs
  14     write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
  15         row.names=F, col.names=F)
  16     write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
  17         row.names=F, col.names=F)
  18     write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
  19         row.names=F, col.names=F)
  20     write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
  21         row.names=F, col.names=F)
  22     write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
  23         row.names=F, col.names=F)
  24     write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
  25         row.names=F, col.names=F)
  26     write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
  27         row.names=F, col.names=F)
  28     write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
  29         row.names=F, col.names=F)
  30     write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
  31         row.names=F, col.names=F)
  32     write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
  33         row.names=F, col.names=F)
  34     write.table(as.double(tau), paste(testFolder,"tau",sep=""),
  35         row.names=F, col.names=F)
  36     write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
  37         row.names=F, col.names=F)
  38
  39     res = valse::EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,
  40         maxi,gamma,lambda,xy$X,xy$Y,tau,fast=FALSE)
  41
  42     #save outputs
  43     write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F)
  44     write.table(as.double(res$rho),paste(testFolder,"rho",sep=""),row.names=F,col.names=F)
  45     write.table(as.double(res$pi),paste(testFolder,"pi",sep=""),row.names=F,col.names=F)
  46     write.table(as.double(res$llh),paste(testFolder,"llh",sep=""),row.names=F,col.names=F)
  47     write.table(as.double(res$S),paste(testFolder,"S",sep=""),row.names=F,col.names=F)
  48     write.table(as.integer(res$affec),paste(testFolder,"affec",sep=""),row.names=F,col.names=F)
  49 }