projects / valse.git / blame
| Commit | Line | Data |
|---|---|---|
| 31463ab8 | 1 | source("EMGLLF.R") |
| 086ca318 | 2 | source("helper.R") |
| 825cf55f | 3 | |
| 99b372ae BA |
4 | generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, |
| 5 | gamma=1., lambda=0.5, tau=1e-6) | |
| 6 | { | |
| 825cf55f | 7 | testFolder = "../data/" |
| 99b372ae | 8 | dir.create(testFolder, showWarnings=FALSE, mode="0755") |
| 99b372ae | 9 | |
| 9ade3f1b | 10 | require(valse) |
| ef67d338 BA |
11 | params = valse:::basicInitParameters(n, p, m, k) |
| 12 | xy = valse:::generateXYdefault(n, p, m, k) | |
| c3bc4705 BA |
13 | |
| 14 | #save inputs | |
| e8bb4764 BA |
15 | write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""), |
| 16 | row.names=F, col.names=F) | |
| 17 | write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""), | |
| 18 | row.names=F, col.names=F) | |
| 19 | write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""), | |
| 20 | row.names=F, col.names=F) | |
| 21 | write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""), | |
| 22 | row.names=F, col.names=F) | |
| 23 | write.table(as.integer(mini), paste(testFolder,"mini",sep=""), | |
| 24 | row.names=F, col.names=F) | |
| 25 | write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""), | |
| 26 | row.names=F, col.names=F) | |
| 27 | write.table(as.double(gamma), paste(testFolder,"gamma",sep=""), | |
| 28 | row.names=F, col.names=F) | |
| 29 | write.table(as.double(lambda), paste(testFolder,"lambda",sep=""), | |
| 30 | row.names=F, col.names=F) | |
| ef67d338 | 31 | write.table(as.double(xy$X), paste(testFolder,"X",sep=""), |
| e8bb4764 | 32 | row.names=F, col.names=F) |
| ef67d338 | 33 | write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""), |
| e8bb4764 BA |
34 | row.names=F, col.names=F) |
| 35 | write.table(as.double(tau), paste(testFolder,"tau",sep=""), | |
| 36 | row.names=F, col.names=F) | |
| 825cf55f | 37 | write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""), |
| e8bb4764 | 38 | row.names=F, col.names=F) |
| 99b372ae | 39 | |
| f7244815 | 40 | res = EMGLLF_R(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi, |
| ef67d338 | 41 | gamma,lambda,xy$X,xy$Y,tau) |
| 99b372ae BA |
42 | |
| 43 | #save outputs | |
| e8bb4764 BA |
44 | write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F) |
| 45 | write.table(as.double(res$rho), paste(testFolder,"rho",sep=""), row.names=F, col.names=F) | |
| 46 | write.table(as.double(res$pi), paste(testFolder,"pi",sep=""), row.names=F, col.names=F) | |
| 47 | write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F, col.names=F) | |
| 48 | write.table(as.double(res$S), paste(testFolder,"S",sep=""), row.names=F, col.names=F) | |
| 8be79c46 | 49 | write.table(as.integer(res$affec), paste(testFolder,"affec",sep=""), row.names=F, col.names=F) |
| 99b372ae | 50 | } |