Adjustments for CRAN upload
[valse.git] / test / generateRunSaveTest_EMGLLF.R
CommitLineData
3453829e
BA
1source("helper.R")
2library(valse)
3
4generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1., lambda=0.5, eps=1e-6)
5{
6 testFolder = "./data/"
7 dir.create(testFolder, showWarnings=FALSE, mode="0755")
8
9 params = basicInitParameters(n, p, m, k)
10 xy = generateXYdefault(n, p, m, k)
11
12 #save inputs
13 write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
14 row.names=F, col.names=F)
15 write.table(as.double(params$rhoInit), paste(testFolder,"rhoInit",sep=""),
16 row.names=F, col.names=F)
17 write.table(as.double(params$piInit), paste(testFolder,"piInit",sep=""),
18 row.names=F, col.names=F)
19 write.table(as.double(params$gamInit), paste(testFolder,"gamInit",sep=""),
20 row.names=F, col.names=F)
21 write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
22 row.names=F, col.names=F)
23 write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
24 row.names=F, col.names=F)
25 write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
26 row.names=F, col.names=F)
27 write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
28 row.names=F, col.names=F)
29 write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
30 row.names=F, col.names=F)
31 write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
32 row.names=F, col.names=F)
33 write.table(as.double(eps), paste(testFolder,"eps",sep=""),
34 row.names=F, col.names=F)
35 write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
36 row.names=F, col.names=F)
37
38 res = valse::EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,
39 maxi,gamma,lambda,xy$X,xy$Y,eps,fast=FALSE)
40
41 #save outputs
42 write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F)
43 write.table(as.double(res$rho),paste(testFolder,"rho",sep=""),row.names=F,col.names=F)
44 write.table(as.double(res$pi),paste(testFolder,"pi",sep=""),row.names=F,col.names=F)
45 write.table(as.double(res$llh),paste(testFolder,"llh",sep=""),row.names=F,col.names=F)
46 write.table(as.double(res$S),paste(testFolder,"S",sep=""),row.names=F,col.names=F)
47 write.table(as.integer(res$affec),paste(testFolder,"affec",sep=""),row.names=F,col.names=F)
48}