context("Check that computeFilaments behaves as expected") #MOCK data; NOTE: could be in inst/testdata as well getDataTest = function(n, shift) { x = seq(0,10,0.1) L = length(x) s1 = cos(x) s2 = sin(x) s3 = c( s1[1:(L%/%2)] , s2[(L%/%2+1):L] ) #sum((s1-s2)^2) == 97.59381 #sum((s1-s3)^2) == 57.03051 #sum((s2-s3)^2) == 40.5633 s = list( s1, s2, s3 ) series = list() for (i in seq_len(n)) { index = (i-1) %% 3 + 1 #map 1->1, 2->2, 3->3, 4->1, ..., 149->2, 150->3 level = mean(s[[index]]) serie = s[[index]] - level + rnorm(L,sd=0.01) # 10 series with NAs for index 2 if (index == 2 && i >= 60 && i<= 90) serie[sample(seq_len(L),1)] = NA series[[i]] = list("level"=level,"serie"=serie) #no need for more } if (shift) { # Simulate shift at origin when predict_at > 0 series[2:(n+1)] = series[1:n] series[[1]] = list("level"=0, "serie"=s[[1]][1:(L%/%2)]) } new("Data", data=series) } test_that("output is as expected on simulated series, predict_at == 0", { data = getDataTest(150, shift=FALSE) # index 143 : serie type 2 f = computeFilaments(data, 143, limit=60, plot=FALSE) # Expected output: 23 series of type 3 (closer), then 50-3-10 series of type 2, then index 143 expect_identical(length(f$indices), as.integer(61)) #61 because result also contain "today" expect_identical(length(f$colors), as.integer(61)) for (i in 1:23) { expect_equal((f$indices[i]-1) %% 3 + 1, 3) expect_match(f$colors[i], f$colors[1]) } for (i in 24:60) { expect_equal((f$indices[i]-1) %% 3 + 1, 2) expect_match(f$colors[i], f$colors[24]) } expect_equal(f$indices[61], 143) expect_match(f$colors[61], "#FF0000") #special color: current day in red expect_match(f$colors[1], "#E*") expect_match(f$colors[24], "#1*") }) test_that("output is as expected on simulated series, predict_at > 0", { data = getDataTest(150, shift=TRUE) # index 142 : serie type 3 f = computeFilaments(data, 142, limit=70, plot=FALSE) # Expected output: 24 series of type 2 (closer) then 50-4 series of type 3, then 142 expect_identical(length(f$indices), as.integer(71)) expect_identical(length(f$colors), as.integer(71)) expect_true(all(f$indices >= 2)) #no type-1 neighbors for (i in 1:24) { # -1 + -1 because of the initial shift expect_equal((f$indices[i]-2) %% 3 + 1, 2) expect_match(f$colors[i], f$colors[1]) } for (i in 25:70) { expect_equal((f$indices[i]-2) %% 3 + 1, 3) expect_match(f$colors[i], f$colors[25]) } expect_equal(f$indices[71], 142) expect_match(f$colors[71], "#FF0000") expect_match(f$colors[1], "#E*") expect_match(f$colors[25], "#1*") }) test_that("output is as expected on simulated series", { data = getDataTest(150, shift=TRUE) # index 143 : serie type 1 f = computeFilaments(data, 143, limit=60, plot=FALSE) # Expected output: 23 series of type 3 (closer), then 50-10-3 series of type 1, then 143 # NOTE: -10 because only past days with no-NAs tomorrow => exclude type 1 in [60,90[ expect_identical(length(f$indices), as.integer(61)) expect_identical(length(f$colors), as.integer(61)) expect_true(all(f$indices >= 2)) #first_day should be 2 for (i in 1:23) { expect_equal(( (f$indices[i]-2) %% 3 ) + 1, 3) expect_match(f$colors[i], f$colors[1]) } for (i in 24:60) { expect_equal(( (f$indices[i]-2) %% 3 ) + 1, 1) expect_match(f$colors[i], f$colors[24]) } expect_equal(f$indices[61], 143) expect_match(f$colors[61], "#FF0000") expect_match(f$colors[1], "#E*") expect_match(f$colors[24], "#1*") })