X-Git-Url: https://git.auder.net/?p=morpheus.git;a=blobdiff_plain;f=pkg%2Fman%2Fmorpheus-package.Rd;h=a66684f2abdcd00b7f6cebbfa3b78abbcbff3889;hp=e8181aadb39232d528e33166a4e1264bd12aeb58;hb=5859426b074bdb7084627f8eeba806f479f04f05;hpb=85e0343a4f50d28caa2f2fc9d3aa0f26c7925b17

diff --git a/pkg/man/morpheus-package.Rd b/pkg/man/morpheus-package.Rd
index e8181aa..a66684f 100644
--- a/pkg/man/morpheus-package.Rd
+++ b/pkg/man/morpheus-package.Rd
@@ -14,22 +14,23 @@
 \details{
 	The package devtools should be useful in development stage, since we rely on testthat for
 	unit tests, and roxygen2 for documentation. knitr is used to generate the package vignette.
+	jointDiag allows to solve a joint diagonalization problem, providing a more robust
+	solution compared to a single diagonalization.
 	Concerning the other suggested packages:
 	\itemize{
 		\item{tensor is used for comparing to some reference functions initially coded in R;
 			it should not be required in further package versions;}
-		\item{jointDiag allows to solve a joint diagonalization problem, providing a more
-			robust solution compared to a single diagonalization;}
 		\item{parallel (generally) permits to run the bootstrap method faster.}
 	}
 
-	The three main functions are located in R/main.R:
+	The two main functions are located in R/computeMu.R and R/optimParams.R:
 	\itemize{
-		\item{getParamsDirs_ref: reference method to estimate parameters directions;}
-		\item{getParamsDirs: method of choice to estimate parameters directions, using a
-			spectral decomposition of inputs/outputs;}
-		\item{getBootstrapParams: run getParamsDirs on B bootstrap replicates.}
+		\item{computeMu(): estimation of parameters directions;}
+		\item{optimParams(): builds an object \code{o} to estimate all other parameters
+			when calling \code{o$run()}, starting from the directions obtained by previous function}
 	}
+	See also \code{multiRun()}, which is a flexible method to run Monte-Carlo or bootstrap
+	estimations using different models in various contexts.
 }
 
 \author{