X-Git-Url: https://git.auder.net/?p=epclust.git;a=blobdiff_plain;f=epclust%2FR%2Fde_serialize.R;h=fd3a5dbaaf55ba929909e7ffa6b11974d65cc3ed;hp=f04c13a5220a7688cdaf565e6e4b6c77bb9c3cd0;hb=0486fbadb122cb4d78c5d9f248c29800a59eb24e;hpb=37c82bbafbffc19e8b47a521952bac58f189e9ea diff --git a/epclust/R/de_serialize.R b/epclust/R/de_serialize.R index f04c13a..fd3a5db 100644 --- a/epclust/R/de_serialize.R +++ b/epclust/R/de_serialize.R @@ -44,7 +44,7 @@ binarize = function(data_ascii, data_bin_file, nb_per_chunk, { #number of items always on 8 bytes writeBin(0L, data_bin, size=8, endian=endian) - if ( is_matrix ) + if (is_matrix) data_length = nrow(data_ascii) else #connection { @@ -58,11 +58,11 @@ binarize = function(data_ascii, data_bin_file, nb_per_chunk, index = 1 repeat { - if ( is_matrix ) + if (is_matrix) { data_chunk = if (index <= ncol(data_ascii)) - as.double(data_ascii[,index:min(nrow(data_ascii),index+nb_per_chunk-1)]) + as.double(data_ascii[,index:min(ncol(data_ascii),index+nb_per_chunk-1)]) else double(0) index = index + nb_per_chunk @@ -113,13 +113,13 @@ getDataInFile = function(indices, data_bin_file, nbytes=4, endian=.Platform$endi data_bin = file(data_bin_file, "rb") data_size = file.info(data_bin_file)$size data_length = readBin(data_bin, "integer", n=1, size=8, endian=endian) - data_ascii = sapply( indices, function(i) { + data_ascii = do.call( cbind, lapply( indices, function(i) { offset = 8+(i-1)*data_length*nbytes if (offset > data_size) - return (vector("double",0)) + return (NULL) ignored = seek(data_bin, offset) readBin(data_bin, "double", n=data_length, size=nbytes, endian=endian) - } ) + } ) ) close(data_bin) - if (ncol(data_ascii)>0) data_ascii else NULL + data_ascii }