X-Git-Url: https://git.auder.net/?a=blobdiff_plain;f=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_constructionModelesLassoRank.R;fp=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_constructionModelesLassoRank.R;h=09d98233541cf67a4ecabe4c9408b0354dd5e11e;hb=f1b906da691f13c6eae25899188d1c071e79b04e;hp=0000000000000000000000000000000000000000;hpb=dc4252096180c25408d656a1442579bbd8dfa82f;p=valse.git

diff --git a/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R
new file mode 100644
index 0000000..09d9823
--- /dev/null
+++ b/src/test/generate_test_data/generateRunSaveTest_constructionModelesLassoRank.R
@@ -0,0 +1,45 @@
+generateRunSaveTest_constructionModelesLassoRank = function(n=200, p=15, m=10, L=12, mini=5, maxi=10, gamma=1.0, rangmin=3, rangmax=6){
+  testFolder = "data/"
+  dir.create(testFolder, showWarnings=FALSE, mode="0755")
+  delimiter = " "
+  
+  tau = 1e-6
+  
+  
+  pi = matrix(0, k,L)
+  for(i in 1:L){
+    pi[,i] = rep(1.0/k, k)
+  }
+  rho = array(0, dim=c(m,m,k,L))
+  for(l in 1:L){
+    for(r in 1:k){
+      rho[,,r,l] = diag(1,m)
+    }
+  }
+  #Generate X and Y
+  generateIOdef = generateIOdefault(n, p, m, k)
+  
+  A1 = matrix(0,p,L)
+  for(i in 1:L){
+    A1[,i] = seq(1,p)
+  }
+  #save inputs
+  write.table(paste(testFolder,"rho",sep=""), rho, sep=delimiter)
+  write.table(paste(testFolder,"pi",sep=""), pi, sep=delimiter)
+  write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
+  write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
+  write.table(paste(testFolder,"X",sep=""), generateIOdef$X sep=delimiter)
+  write.table(paste(testFolder,"Y",sep=""), generateIOdef$Y, sep=delimiter)
+  write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
+  write.table(paste(testFolder,"A1",sep=""), A1, sep=delimiter)
+  write.table(paste(testFolder,"rangmin",sep=""), rangmin, sep=delimiter)
+  write.table(paste(testFolder,"rangmax",sep=""), rangmax, sep=delimiter)
+  write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
+  
+  construct = constructionModelesLassoRank(pi,rho,mini,maxi,X,Y,tau,A1,rangmin,rangmax))
+  
+  #save output
+  write.table(paste(testFolder,"phi",sep=""), construct$phi, sep=delimiter)
+  write.table(paste(testFolder,"lvraisemblance",sep=""), construct$lvraisemblance, sep=delimiter)
+  
+}
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