X-Git-Url: https://git.auder.net/?a=blobdiff_plain;f=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGrank.R;fp=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGrank.R;h=0000000000000000000000000000000000000000;hb=f87ff0f5116c0c1c59c5608e46563ff0f79e5d43;hp=99da9bc3a9b6161e35d320650d458b1d9c4fdda0;hpb=53fa233d8fbeaf4d51a4874ba69d8472d01d04ba;p=valse.git

diff --git a/src/test/generate_test_data/generateRunSaveTest_EMGrank.R b/src/test/generate_test_data/generateRunSaveTest_EMGrank.R
deleted file mode 100644
index 99da9bc..0000000
--- a/src/test/generate_test_data/generateRunSaveTest_EMGrank.R
+++ /dev/null
@@ -1,41 +0,0 @@
-source("EMGrank.R")
-
-generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
-	rank = c(1,2,4))
-{
-  tau = 1e-6
-  pi = rep(1.0/k, k)
-  rho = array(dim=c(m,m,k))
-  for(i in 1:k)
-    rho[,,i] = diag(1,m)
-	require(valse)
-  xy = valse:::generateXYdefault(n, p, m, k)
-
-  testFolder = "../data/"
-  dir.create(testFolder, showWarnings=FALSE, mode="0755")
-  #save inputs
-  write.table(as.double(rho), paste(testFolder,"rho",sep=""),
-		row.names=F, col.names=F)
-	write.table(as.double(pi), paste(testFolder,"pi",sep=""),
-		row.names=F, col.names=F)
-  write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
-		row.names=F, col.names=F)
-  write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
-		row.names=F, col.names=F)
-  write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
-		row.names=F, col.names=F)
-  write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
-		row.names=F, col.names=F)
-  write.table(as.double(tau), paste(testFolder,"tau",sep=""),
-		row.names=F, col.names=F)
-  write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
-		row.names=F, col.names=F)
-  write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
-		row.names=F, col.names=F)
-
-  res = EMGrank(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
-
-  #save output
-  write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)
-  write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F)
-}