X-Git-Url: https://git.auder.net/?a=blobdiff_plain;f=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGLLF.R;fp=src%2Ftest%2Fgenerate_test_data%2FgenerateRunSaveTest_EMGLLF.R;h=60ac6c57548453042a8dc57368503e8bd45c41a8;hb=99b372aebd8b00775c40b16c512d9e59394a8c14;hp=0000000000000000000000000000000000000000;hpb=76fb4dac1ebe070371f1c081b83fce1cb8677564;p=valse.git

diff --git a/src/test/generate_test_data/generateRunSaveTest_EMGLLF.R b/src/test/generate_test_data/generateRunSaveTest_EMGLLF.R
new file mode 100644
index 0000000..60ac6c5
--- /dev/null
+++ b/src/test/generate_test_data/generateRunSaveTest_EMGLLF.R
@@ -0,0 +1,33 @@
+generateRunSaveTest_EMGLLF = function(n=200, p=15, m=10, k=3, mini=5, maxi=10,
+	gamma=1., lambda=0.5, tau=1e-6)
+{
+	testFolder = "data/"
+	dir.create(testFolder, showWarnings=FALSE, mode="0755")
+	delimiter = " "
+
+	#save inputs
+	params = basicInitParameters(n, p, m, k)
+	io = generateIOdefault(n, p, m, k)
+	write.table(paste(testFolder,"phiInit",sep=""), params$phiInit, sep=delimiter);
+	write.table(paste(testFolder,"rhoInit",sep=""), params$rhoInit, sep=delimiter);
+	write.table(paste(testFolder,"piInit",sep=""), params$piInit, sep=delimiter);
+	write.table(paste(testFolder,"gamInit",sep=""), params$gamInit, sep=delimiter);
+	write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter);
+	write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter);
+	write.table(paste(testFolder,"gamma",sep=""), gamma, sep=delimiter);
+	write.table(paste(testFolder,"lambda",sep=""), lambda, sep=delimiter);
+	write.table(paste(testFolder,"X",sep=""), io$X, sep=delimiter);
+	write.table(paste(testFolder,"Y",sep=""), io$Y, sep=delimiter);
+	write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter);
+	write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter);
+
+	res = EMGLLF(params$phiInit,params$rhoInit,params$piInit,params$gamInit,mini,maxi,
+		gamma,lambda,io$X,io$Y,tau);
+
+	#save outputs
+	write.table(paste(testFolder,"phi",sep=""), res$phi, sep=delimiter);
+	write.table(paste(testFolder,"rho",sep=""), res$rho, sep=delimiter);
+	write.table(paste(testFolder,"pi",sep=""), res$pi, sep=delimiter);
+	write.table(paste(testFolder,"LLF",sep=""), res$LLF, sep=delimiter);
+	write.table(paste(testFolder,"S",sep=""), res$S, sep=delimiter);
+}