X-Git-Url: https://git.auder.net/?a=blobdiff_plain;f=src%2Fsources%2FEMGLLF.c;h=87fd1997517296d47a02733011d40ac5963ad47d;hb=e39bc178cf5de02489ea2dce3869ba6323e18492;hp=96b81b376b9fa61415250faa62c95d99dbf52f17;hpb=493a35bfea6d1210c94ced8fbfe3e572f0389ea5;p=valse.git

diff --git a/src/sources/EMGLLF.c b/src/sources/EMGLLF.c
index 96b81b3..87fd199 100644
--- a/src/sources/EMGLLF.c
+++ b/src/sources/EMGLLF.c
@@ -1,31 +1,32 @@
-#include "EMGLLF.h"
+#include "utils.h"
+#include <stdlib.h>
 #include <gsl/gsl_linalg.h>
 
-// TODO: comment on EMGLLF purpose
-void EMGLLF(
+// TODO: don't recompute indexes every time......
+void EMGLLF_core(
 	// IN parameters
-	const Real* phiInit,  // parametre initial de moyenne renormalisé
-	const Real* rhoInit,  // parametre initial de variance renormalisé
-	const Real* piInit,   // parametre initial des proportions
-	const Real* gamInit,  // paramètre initial des probabilités a posteriori de chaque échantillon
-	Int mini,      // nombre minimal d'itérations dans l'algorithme EM	
-	Int maxi,      // nombre maximal d'itérations dans l'algorithme EM
-	Real gamma,  // valeur de gamma : puissance des proportions dans la pénalisation pour un Lasso adaptatif
+	const Real* phiInit, // parametre initial de moyenne renormalisé
+	const Real* rhoInit, // parametre initial de variance renormalisé
+	const Real* piInit,	 // parametre initial des proportions
+	const Real* gamInit, // paramètre initial des probabilités a posteriori de chaque échantillon
+	int mini, // nombre minimal d'itérations dans l'algorithme EM
+	int maxi, // nombre maximal d'itérations dans l'algorithme EM
+	Real gamma, // puissance des proportions dans la pénalisation pour un Lasso adaptatif
 	Real lambda, // valeur du paramètre de régularisation du Lasso
-	const Real* X,     // régresseurs
-	const Real* Y,     // réponse
-	Real tau,    // seuil pour accepter la convergence
+	const Real* X, // régresseurs
+	const Real* Y, // réponse
+	Real tau, // seuil pour accepter la convergence
 	// OUT parameters (all pointers, to be modified)
-	Real* phi,  // parametre de moyenne renormalisé, calculé par l'EM
-	Real* rho,  // parametre de variance renormalisé, calculé par l'EM
-	Real* pi,   // parametre des proportions renormalisé, calculé par l'EM
-	Real* LLF,   // log vraisemblance associé à cet échantillon, pour les valeurs estimées des paramètres
-    Real* S,
+	Real* phi, // parametre de moyenne renormalisé, calculé par l'EM
+	Real* rho, // parametre de variance renormalisé, calculé par l'EM
+	Real* pi, // parametre des proportions renormalisé, calculé par l'EM
+	Real* LLF, // log vraisemblance associée à cet échantillon, pour les valeurs estimées des paramètres
+	Real* S,
 	// additional size parameters
-	mwSize n,         // nombre d'echantillons
-	mwSize p,         // nombre de covariables
-	mwSize m,         // taille de Y (multivarié)
-	mwSize k)         // nombre de composantes dans le mélange
+	int n, // nombre d'echantillons
+	int p, // nombre de covariables
+	int m, // taille de Y (multivarié)
+	int k) // nombre de composantes dans le mélange
 {
 	//Initialize outputs
 	copyArray(phiInit, phi, p*m*k);
@@ -33,7 +34,7 @@ void EMGLLF(
 	copyArray(piInit, pi, k);
 	zeroArray(LLF, maxi);
 	//S is already allocated, and doesn't need to be 'zeroed'
-	
+
 	//Other local variables
 	//NOTE: variables order is always [maxi],n,p,m,k
 	Real* gam = (Real*)malloc(n*k*sizeof(Real));
@@ -57,53 +58,53 @@ void EMGLLF(
 	gsl_permutation* permutation = gsl_permutation_alloc(m);
 	Real* YiRhoR = (Real*)malloc(m*sizeof(Real));
 	Real* XiPhiR = (Real*)malloc(m*sizeof(Real));
-	Real dist = 0.0;
-	Real dist2 = 0.0;
-	Int ite = 0;
+	Real dist = 0.;
+	Real dist2 = 0.;
+	int ite = 0;
 	Real EPS = 1e-15;
 	Real* dotProducts = (Real*)malloc(k*sizeof(Real));
-	
+
 	while (ite < mini || (ite < maxi && (dist >= tau || dist2 >= sqrt(tau))))
 	{
 		copyArray(phi, Phi, p*m*k);
 		copyArray(rho, Rho, m*m*k);
 		copyArray(pi, Pi, k);
-		
-		// Calculs associes a Y et X
-		for (mwSize r=0; r<k; r++)
+
+		// Calculs associés a Y et X
+		for (int r=0; r<k; r++)
 		{
-			for (mwSize mm=0; mm<m; mm++)
+			for (int mm=0; mm<m; mm++)
 			{
 				//Y2(:,mm,r)=sqrt(gam(:,r)).*transpose(Y(mm,:));
-				for (mwSize u=0; u<n; u++)
-					Y2[u*m*k+mm*k+r] = sqrt(gam[u*k+r]) * Y[u*m+mm];
+				for (int u=0; u<n; u++)
+					Y2[ai(u,mm,r,n,m,k)] = sqrt(gam[mi(u,r,n,k)]) * Y[mi(u,mm,m,n)];
 			}
-			for (mwSize i=0; i<n; i++)
+			for (int i=0; i<n; i++)
 			{
 				//X2(i,:,r)=X(i,:).*sqrt(gam(i,r));
-				for (mwSize u=0; u<p; u++)
-					X2[i*p*k+u*k+r] = sqrt(gam[i*k+r]) * X[i*p+u];
+				for (int u=0; u<p; u++)
+					X2[ai(i,u,r,n,p,k)] = sqrt(gam[mi(i,r,n,k)]) * X[mi(i,u,n,p)];
 			}
-			for (mwSize mm=0; mm<m; mm++)
+			for (int mm=0; mm<m; mm++)
 			{
 				//ps2(:,mm,r)=transpose(X2(:,:,r))*Y2(:,mm,r);
-				for (mwSize u=0; u<p; u++)
+				for (int u=0; u<p; u++)
 				{
-					Real dotProduct = 0.0;
-					for (mwSize v=0; v<n; v++)
-						dotProduct += X2[v*p*k+u*k+r] * Y2[v*m*k+mm*k+r];
-					ps2[u*m*k+mm*k+r] = dotProduct;
+					Real dotProduct = 0.;
+					for (int v=0; v<n; v++)
+						dotProduct += X2[ai(v,u,r,n,m,k)] * Y2[ai(v,mm,r,n,m,k)];
+					ps2[ai(u,mm,r,p,m,k)] = dotProduct;
 				}
 			}
-			for (mwSize j=0; j<p; j++)
+			for (int j=0; j<p; j++)
 			{
-				for (mwSize s=0; s<p; s++)
+				for (int s=0; s<p; s++)
 				{
 					//Gram2(j,s,r)=transpose(X2(:,j,r))*(X2(:,s,r));
-					Real dotProduct = 0.0;
-					for (mwSize u=0; u<n; u++)
-						dotProduct += X2[u*p*k+j*k+r] * X2[u*p*k+s*k+r];					
-					Gram2[j*p*k+s*k+r] = dotProduct;
+					Real dotProduct = 0.;
+					for (int u=0; u<n; u++)
+						dotProduct += X2[ai(u,j,r,n,p,k)] * X2[ai(u,s,r,n,p,k)];
+					Gram2[ai(j,s,r,p,p,k)] = dotProduct;
 				}
 			}
 		}
@@ -111,46 +112,46 @@ void EMGLLF(
 		/////////////
 		// Etape M //
 		/////////////
-		
+
 		// Pour pi
-		for (mwSize r=0; r<k; r++)
+		for (int r=0; r<k; r++)
 		{
 			//b(r) = sum(sum(abs(phi(:,:,r))));
-			Real sumAbsPhi = 0.0;
-			for (mwSize u=0; u<p; u++)
-				for (mwSize v=0; v<m; v++)
-					sumAbsPhi += fabs(phi[u*m*k+v*k+r]);
+			Real sumAbsPhi = 0.;
+			for (int u=0; u<p; u++)
+				for (int v=0; v<m; v++)
+					sumAbsPhi += fabs(phi[ai(u,v,r,p,m,k)]);
 			b[r] = sumAbsPhi;
 		}
 		//gam2 = sum(gam,1);
-		for (mwSize u=0; u<k; u++)
+		for (int u=0; u<k; u++)
 		{
-			Real sumOnColumn = 0.0;
-			for (mwSize v=0; v<n; v++)
-				sumOnColumn += gam[v*k+u];
+			Real sumOnColumn = 0.;
+			for (int v=0; v<n; v++)
+				sumOnColumn += gam[mi(v,u,n,k)];
 			gam2[u] = sumOnColumn;
 		}
 		//a=sum(gam*transpose(log(pi)));
-		Real a = 0.0;
-		for (mwSize u=0; u<n; u++)
+		Real a = 0.;
+		for (int u=0; u<n; u++)
 		{
-			Real dotProduct = 0.0;
-			for (mwSize v=0; v<k; v++)
-				dotProduct += gam[u*k+v] * log(pi[v]);
+			Real dotProduct = 0.;
+			for (int v=0; v<k; v++)
+				dotProduct += gam[mi(u,v,n,k)] * log(pi[v]);
 			a += dotProduct;
 		}
-		
+
 		//tant que les proportions sont negatives
-		mwSize kk = 0;
+		int kk = 0;
 		int pi2AllPositive = 0;
-		Real invN = 1.0/n;
+		Real invN = 1./n;
 		while (!pi2AllPositive)
 		{
 			//pi2(:)=pi(:)+0.1^kk*(1/n*gam2(:)-pi(:));
-			for (mwSize r=0; r<k; r++)
+			for (int r=0; r<k; r++)
 				pi2[r] = pi[r] + pow(0.1,kk) * (invN*gam2[r] - pi[r]);
 			pi2AllPositive = 1;
-			for (mwSize r=0; r<k; r++)
+			for (int r=0; r<k; r++)
 			{
 				if (pi2[r] < 0)
 				{
@@ -160,171 +161,174 @@ void EMGLLF(
 			}
 			kk++;
 		}
-		
+
 		//t(m) la plus grande valeur dans la grille O.1^k tel que ce soit décroissante ou constante
 		//(pi.^gamma)*b
-		Real piPowGammaDotB = 0.0;
-		for (mwSize v=0; v<k; v++)
+		Real piPowGammaDotB = 0.;
+		for (int v=0; v<k; v++)
 			piPowGammaDotB += pow(pi[v],gamma) * b[v];
 		//(pi2.^gamma)*b
-		Real pi2PowGammaDotB = 0.0;
-		for (mwSize v=0; v<k; v++)
+		Real pi2PowGammaDotB = 0.;
+		for (int v=0; v<k; v++)
 			pi2PowGammaDotB += pow(pi2[v],gamma) * b[v];
 		//transpose(gam2)*log(pi2)
-		Real prodGam2logPi2 = 0.0;
-		for (mwSize v=0; v<k; v++)
+		Real prodGam2logPi2 = 0.;
+		for (int v=0; v<k; v++)
 			prodGam2logPi2 += gam2[v] * log(pi2[v]);
-		while (-invN*a + lambda*piPowGammaDotB < -invN*prodGam2logPi2 + lambda*pi2PowGammaDotB && kk<1000)
+		while (-invN*a + lambda*piPowGammaDotB < -invN*prodGam2logPi2 + lambda*pi2PowGammaDotB
+			&& kk<1000)
 		{
 			//pi2=pi+0.1^kk*(1/n*gam2-pi);
-			for (mwSize v=0; v<k; v++)
+			for (int v=0; v<k; v++)
 				pi2[v] = pi[v] + pow(0.1,kk) * (invN*gam2[v] - pi[v]);
 			//pi2 was updated, so we recompute pi2PowGammaDotB and prodGam2logPi2
-			pi2PowGammaDotB = 0.0;
-			for (mwSize v=0; v<k; v++)
+			pi2PowGammaDotB = 0.;
+			for (int v=0; v<k; v++)
 				pi2PowGammaDotB += pow(pi2[v],gamma) * b[v];
-			prodGam2logPi2 = 0.0;
-			for (mwSize v=0; v<k; v++)
+			prodGam2logPi2 = 0.;
+			for (int v=0; v<k; v++)
 				prodGam2logPi2 += gam2[v] * log(pi2[v]);
 			kk++;
 		}
 		Real t = pow(0.1,kk);
 		//sum(pi+t*(pi2-pi))
-		Real sumPiPlusTbyDiff = 0.0;
-		for (mwSize v=0; v<k; v++)
+		Real sumPiPlusTbyDiff = 0.;
+		for (int v=0; v<k; v++)
 			sumPiPlusTbyDiff += (pi[v] + t*(pi2[v] - pi[v]));
 		//pi=(pi+t*(pi2-pi))/sum(pi+t*(pi2-pi));
-		for (mwSize v=0; v<k; v++)
+		for (int v=0; v<k; v++)
 			pi[v] = (pi[v] + t*(pi2[v] - pi[v])) / sumPiPlusTbyDiff;
-		
+
 		//Pour phi et rho
-		for (mwSize r=0; r<k; r++)
+		for (int r=0; r<k; r++)
 		{
-			for (mwSize mm=0; mm<m; mm++)
+			for (int mm=0; mm<m; mm++)
 			{
-				for (mwSize i=0; i<n; i++)
+				for (int i=0; i<n; i++)
 				{
 					//< X2(i,:,r) , phi(:,mm,r) >
 					Real dotProduct = 0.0;
-					for (mwSize u=0; u<p; u++)
-						dotProduct += X2[i*p*k+u*k+r] * phi[u*m*k+mm*k+r];
+					for (int u=0; u<p; u++)
+						dotProduct += X2[ai(i,u,r,n,p,k)] * phi[ai(u,mm,r,p,m,k)];
 					//ps1(i,mm,r)=Y2(i,mm,r)*dot(X2(i,:,r),phi(:,mm,r));
-					ps1[i*m*k+mm*k+r] = Y2[i*m*k+mm*k+r] * dotProduct;
-					nY21[i*m*k+mm*k+r] = Y2[i*m*k+mm*k+r] * Y2[i*m*k+mm*k+r];
+					ps1[ai(i,mm,r,n,m,k)] = Y2[ai(i,mm,r,n,m,k)] * dotProduct;
+					nY21[ai(i,mm,r,n,m,k)] = Y2[ai(i,mm,r,n,m,k)] * Y2[ai(i,mm,r,n,m,k)];
 				}
 				//ps(mm,r)=sum(ps1(:,mm,r));
 				Real sumPs1 = 0.0;
-				for (mwSize u=0; u<n; u++)
-					sumPs1 += ps1[u*m*k+mm*k+r];
-				ps[mm*k+r] = sumPs1;
+				for (int u=0; u<n; u++)
+					sumPs1 += ps1[ai(u,mm,r,n,m,k)];
+				ps[mi(mm,r,m,k)] = sumPs1;
 				//nY2(mm,r)=sum(nY21(:,mm,r));
 				Real sumNy21 = 0.0;
-				for (mwSize u=0; u<n; u++)
-					sumNy21 += nY21[u*m*k+mm*k+r];
-				nY2[mm*k+r] = sumNy21;
+				for (int u=0; u<n; u++)
+					sumNy21 += nY21[ai(u,mm,r,n,m,k)];
+				nY2[mi(mm,r,m,k)] = sumNy21;
 				//rho(mm,mm,r)=((ps(mm,r)+sqrt(ps(mm,r)^2+4*nY2(mm,r)*(gam2(r))))/(2*nY2(mm,r)));
-				rho[mm*m*k+mm*k+r] = ( ps[mm*k+r] + sqrt( ps[mm*k+r]*ps[mm*k+r] 
-					+ 4*nY2[mm*k+r] * (gam2[r]) ) ) / (2*nY2[mm*k+r]);
+				rho[ai(mm,mm,r,m,m,k)] = ( ps[mi(mm,r,m,k)] + sqrt( ps[mi(mm,r,m,k)]*ps[mi(mm,r,m,k)]
+					+ 4*nY2[mi(mm,r,m,k)] * (gam2[r]) ) ) / (2*nY2[mi(mm,r,m,k)]);
 			}
 		}
-		for (mwSize r=0; r<k; r++)
+		for (int r=0; r<k; r++)
 		{
-			for (mwSize j=0; j<p; j++)
+			for (int j=0; j<p; j++)
 			{
-				for (mwSize mm=0; mm<m; mm++)
+				for (int mm=0; mm<m; mm++)
 				{
-					//sum(phi(1:j-1,mm,r).*transpose(Gram2(j,1:j-1,r)))+sum(phi(j+1:p,mm,r).*transpose(Gram2(j,j+1:p,r)))
+					//sum(phi(1:j-1,mm,r).*transpose(Gram2(j,1:j-1,r)))+sum(phi(j+1:p,mm,r)
+					// .*transpose(Gram2(j,j+1:p,r)))
 					Real dotPhiGram2 = 0.0;
-					for (mwSize u=0; u<j; u++)
-						dotPhiGram2 += phi[u*m*k+mm*k+r] * Gram2[j*p*k+u*k+r];
-					for (mwSize u=j+1; u<p; u++)
-						dotPhiGram2 += phi[u*m*k+mm*k+r] * Gram2[j*p*k+u*k+r];
+					for (int u=0; u<j; u++)
+						dotPhiGram2 += phi[ai(u,mm,r,p,m,k)] * Gram2[ai(j,u,r,p,p,k)];
+					for (int u=j+1; u<p; u++)
+						dotPhiGram2 += phi[ai(u,mm,r,p,m,k)] * Gram2[ai(j,u,r,p,p,k)];
 					//S(j,r,mm)=-rho(mm,mm,r)*ps2(j,mm,r)+sum(phi(1:j-1,mm,r).*transpose(Gram2(j,1:j-1,r)))
-					//    +sum(phi(j+1:p,mm,r).*transpose(Gram2(j,j+1:p,r)));
-					S[j*m*k+mm*k+r] = -rho[mm*m*k+mm*k+r] * ps2[j*m*k+mm*k+r] + dotPhiGram2;
-					if (fabs(S[j*m*k+mm*k+r]) <= n*lambda*pow(pi[r],gamma))
-						phi[j*m*k+mm*k+r] = 0;
-					else if (S[j*m*k+mm*k+r] > n*lambda*pow(pi[r],gamma))
-						phi[j*m*k+mm*k+r] = (n*lambda*pow(pi[r],gamma) - S[j*m*k+mm*k+r]) 
-							/ Gram2[j*p*k+j*k+r];
+					//		+sum(phi(j+1:p,mm,r).*transpose(Gram2(j,j+1:p,r)));
+					S[ai(j,mm,r,p,m,k)] = -rho[ai(mm,mm,r,m,m,k)] * ps2[ai(j,mm,r,p,m,k)] + dotPhiGram2;
+					if (fabs(S[ai(j,mm,r,p,m,k)]) <= n*lambda*pow(pi[r],gamma))
+						phi[ai(j,mm,r,p,m,k)] = 0;
+					else if (S[ai(j,mm,r,p,m,k)] > n*lambda*pow(pi[r],gamma))
+						phi[ai(j,mm,r,p,m,k)] = (n*lambda*pow(pi[r],gamma) - S[ai(j,mm,r,p,m,k)])
+							/ Gram2[ai(j,j,r,p,p,k)];
 					else
-						phi[j*m*k+mm*k+r] = -(n*lambda*pow(pi[r],gamma) + S[j*m*k+mm*k+r]) 
-							/ Gram2[j*p*k+j*k+r];
+						phi[ai(j,mm,r,p,m,k)] = -(n*lambda*pow(pi[r],gamma) + S[ai(j,mm,r,p,m,k)])
+							/ Gram2[ai(j,j,r,p,p,k)];
 				}
 			}
 		}
-		
+
 		/////////////
 		// Etape E //
 		/////////////
-		
+
 		int signum;
 		Real sumLogLLF2 = 0.0;
-		for (mwSize i=0; i<n; i++)
+		for (int i=0; i<n; i++)
 		{
 			Real sumLLF1 = 0.0;
 			Real sumGamI = 0.0;
 			Real minDotProduct = INFINITY;
-            
-			for (mwSize r=0; r<k; r++)
+
+			for (int r=0; r<k; r++)
 			{
 				//Compute
 				//Gam(i,r) = Pi(r) * det(Rho(:,:,r)) * exp( -1/2 * (Y(i,:)*Rho(:,:,r) - X(i,:)...
-				//    *phi(:,:,r)) * transpose( Y(i,:)*Rho(:,:,r) - X(i,:)*phi(:,:,r) ) );
+				//		*phi(:,:,r)) * transpose( Y(i,:)*Rho(:,:,r) - X(i,:)*phi(:,:,r) ) );
 				//split in several sub-steps
 				
 				//compute Y(i,:)*rho(:,:,r)
-				for (mwSize u=0; u<m; u++)
+				for (int u=0; u<m; u++)
 				{
 					YiRhoR[u] = 0.0;
-					for (mwSize v=0; v<m; v++)
-						YiRhoR[u] += Y[i*m+v] * rho[v*m*k+u*k+r];
+					for (int v=0; v<m; v++)
+						YiRhoR[u] += Y[mi(i,v,n,m)] * rho[ai(v,u,r,m,m,k)];
 				}
-				
+
 				//compute X(i,:)*phi(:,:,r)
-				for (mwSize u=0; u<m; u++)
+				for (int u=0; u<m; u++)
 				{
 					XiPhiR[u] = 0.0;
-					for (mwSize v=0; v<p; v++)
-						XiPhiR[u] += X[i*p+v] * phi[v*m*k+u*k+r];
+					for (int v=0; v<p; v++)
+						XiPhiR[u] += X[mi(i,v,n,p)] * phi[ai(v,u,r,p,m,k)];
 				}
-				
-				// compute dotProduct < Y(:,i)*rho(:,:,r)-X(i,:)*phi(:,:,r) . Y(:,i)*rho(:,:,r)-X(i,:)*phi(:,:,r) >
+
+				//compute dotProduct
+				// < Y(:,i)*rho(:,:,r)-X(i,:)*phi(:,:,r) . Y(:,i)*rho(:,:,r)-X(i,:)*phi(:,:,r) >
 				dotProducts[r] = 0.0;
-				for (mwSize u=0; u<m; u++)
+				for (int u=0; u<m; u++)
 					dotProducts[r] += (YiRhoR[u]-XiPhiR[u]) * (YiRhoR[u]-XiPhiR[u]);
 				if (dotProducts[r] < minDotProduct)
 					minDotProduct = dotProducts[r];
 			}
 			Real shift = 0.5*minDotProduct;
-			for (mwSize r=0; r<k; r++)
+			for (int r=0; r<k; r++)
 			{
 				//compute det(rho(:,:,r)) [TODO: avoid re-computations]
-				for (mwSize u=0; u<m; u++)
+				for (int u=0; u<m; u++)
 				{
-					for (mwSize v=0; v<m; v++)
-						matrix->data[u*m+v] = rho[u*m*k+v*k+r];
+					for (int v=0; v<m; v++)
+						matrix->data[u*m+v] = rho[ai(u,v,r,m,m,k)];
 				}
 				gsl_linalg_LU_decomp(matrix, permutation, &signum);
 				Real detRhoR = gsl_linalg_LU_det(matrix, signum);
-				
-				Gam[i*k+r] = pi[r] * detRhoR * exp(-0.5*dotProducts[r] + shift);
-				sumLLF1 += Gam[i*k+r] / pow(2*M_PI,m/2.0);
-				sumGamI += Gam[i*k+r];
+
+				Gam[mi(i,r,n,k)] = pi[r] * detRhoR * exp(-0.5*dotProducts[r] + shift);
+				sumLLF1 += Gam[mi(i,r,n,k)] / pow(2*M_PI,m/2.0);
+				sumGamI += Gam[mi(i,r,n,k)];
 			}
 			sumLogLLF2 += log(sumLLF1);
-			for (mwSize r=0; r<k; r++)
+			for (int r=0; r<k; r++)
 			{
 				//gam(i,r)=Gam(i,r)/sum(Gam(i,:));
-				gam[i*k+r] = sumGamI > EPS
-					? Gam[i*k+r] / sumGamI
+				gam[mi(i,r,n,k)] = sumGamI > EPS
+					? Gam[mi(i,r,n,k)] / sumGamI
 					: 0.0;
 			}
 		}
 		
 		//sum(pen(ite,:))
 		Real sumPen = 0.0;
-		for (mwSize r=0; r<k; r++)
+		for (int r=0; r<k; r++)
 			sumPen += pow(pi[r],gamma) * b[r];
 		//LLF(ite)=-1/n*sum(log(LLF2(ite,:)))+lambda*sum(pen(ite,:));
 		LLF[ite] = -invN * sumLogLLF2 + lambda * sumPen;
@@ -335,14 +339,14 @@ void EMGLLF(
 		
 		//Dist1=max(max((abs(phi-Phi))./(1+abs(phi))));
 		Real Dist1 = 0.0;
-		for (mwSize u=0; u<p; u++)
+		for (int u=0; u<p; u++)
 		{
-			for (mwSize v=0; v<m; v++)
+			for (int v=0; v<m; v++)
 			{
-				for (mwSize w=0; w<k; w++)
+				for (int w=0; w<k; w++)
 				{
-					Real tmpDist = fabs(phi[u*m*k+v*k+w]-Phi[u*m*k+v*k+w]) 
-						/ (1.0+fabs(phi[u*m*k+v*k+w]));
+					Real tmpDist = fabs(phi[ai(u,v,w,p,m,k)]-Phi[ai(u,v,w,p,m,k)]) 
+						/ (1.0+fabs(phi[ai(u,v,w,p,m,k)]));
 					if (tmpDist > Dist1)
 						Dist1 = tmpDist;
 				}
@@ -350,14 +354,14 @@ void EMGLLF(
 		}
 		//Dist2=max(max((abs(rho-Rho))./(1+abs(rho))));
 		Real Dist2 = 0.0;
-		for (mwSize u=0; u<m; u++)
+		for (int u=0; u<m; u++)
 		{
-			for (mwSize v=0; v<m; v++)
+			for (int v=0; v<m; v++)
 			{
-				for (mwSize w=0; w<k; w++)
+				for (int w=0; w<k; w++)
 				{
-					Real tmpDist = fabs(rho[u*m*k+v*k+w]-Rho[u*m*k+v*k+w]) 
-						/ (1.0+fabs(rho[u*m*k+v*k+w]));
+					Real tmpDist = fabs(rho[ai(u,v,w,m,m,k)]-Rho[ai(u,v,w,m,m,k)]) 
+						/ (1.0+fabs(rho[ai(u,v,w,m,m,k)]));
 					if (tmpDist > Dist2)
 						Dist2 = tmpDist;
 				}
@@ -365,9 +369,9 @@ void EMGLLF(
 		}
 		//Dist3=max(max((abs(pi-Pi))./(1+abs(Pi))));
 		Real Dist3 = 0.0;
-		for (mwSize u=0; u<n; u++)
+		for (int u=0; u<n; u++)
 		{
-			for (mwSize v=0; v<k; v++)
+			for (int v=0; v<k; v++)
 			{
 				Real tmpDist = fabs(pi[v]-Pi[v]) / (1.0+fabs(pi[v]));
 				if (tmpDist > Dist3)