X-Git-Url: https://git.auder.net/?a=blobdiff_plain;f=reports%2Faccuracy.R;h=ee08078b909fd8fc4e55fb19167eeb09338caa29;hb=f805b3d9618a27d7d48fa5fc8083bab3c1d6b7e2;hp=e9c9d1bfba892f2252eac1242d5fc0d08233e9da;hpb=b46623addc9e63019aa1df1dd2de800b48fdd609;p=morpheus.git

diff --git a/reports/accuracy.R b/reports/accuracy.R
index e9c9d1b..ee08078 100644
--- a/reports/accuracy.R
+++ b/reports/accuracy.R
@@ -1,24 +1,20 @@
-optimBeta <- function(N, n, K, p, beta, b, link, weights, ncores)
+optimBeta <- function(N, n, K, p, beta, b, link, ncores)
 {
 	library(morpheus)
 	res <- multiRun(
-		list(n=n, p=p, beta=beta, b=b, optargs=list(K=K, link=link, weights=weights)),
+		list(n=n, p=p, beta=beta, b=b, K=K, link=link),
 		list(
 			# morpheus
 			function(fargs) {
 				library(morpheus)
-				K <- fargs$optargs$K
-				M <- computeMoments(fargs$X, fargs$Y)
-				fargs$optargs$M <- M
-				mu <- computeMu(fargs$X, fargs$Y, fargs$optargs)
+				K <- fargs$K
+				mu <- computeMu(fargs$X, fargs$Y, list(K=K))
+        op <- optimParams(fargs$X, fargs$Y, K, fargs$link)
+        x_init <- list(p=rep(1/K,K-1), beta=mu, b=rep(0,K))
 				res2 <- NULL
 				tryCatch({
-					op <- optimParams(K,fargs$optargs$link,fargs$optargs)
-					x_init <- list(p=rep(1/K,K-1), beta=mu, b=rep(0,K))
-					res2 <- do.call(rbind, op$run(x_init))
-				}, error = function(e) {
-					res2 <- NA
-				})
+          res2 <- do.call(rbind, op$run(x_init))
+				}, error = function(e) {})
 				res2
 			}
 #			,
@@ -26,7 +22,7 @@ optimBeta <- function(N, n, K, p, beta, b, link, weights, ncores)
 #			function(fargs) {
 #				library(flexmix)
 #				source("../patch_Bettina/FLXMRglm.R")
-#				K <- fargs$optargs$K
+#				K <- fargs$K
 #				dat <- as.data.frame( cbind(fargs$Y,fargs$X) )
 #				res2 <- NULL
 #				tryCatch({
@@ -46,11 +42,9 @@ optimBeta <- function(N, n, K, p, beta, b, link, weights, ncores)
 		),
 		prepareArgs = function(fargs, index) {
 			library(morpheus)
-			io = generateSampleIO(fargs$n, fargs$p, fargs$beta, fargs$b, fargs$optargs$link)
+			io = generateSampleIO(fargs$n, fargs$p, fargs$beta, fargs$b, fargs$link)
 			fargs$X = io$X
 			fargs$Y = io$Y
-			fargs$optargs$K = ncol(fargs$beta)
-			fargs$optargs$M = computeMoments(io$X,io$Y)
 			fargs
 		}, N=N, ncores=ncores, verbose=TRUE)
 	p <- c(p, 1-sum(p))
@@ -71,8 +65,6 @@ N <- 10
 d <- 2
 n <- 1e4
 ncores <- 1
-strw <- "1-1-1"
-weights <- c(1,1,1)
 
 cmd_args <- commandArgs()
 for (arg in cmd_args)
@@ -89,9 +81,6 @@ for (arg in cmd_args)
 			d <- as.integer(spl[2])
 		} else if (spl[1] == "link") {
 			link <- spl[2]
-		} else if (spl[1] == "weights") {
-			strw <- spl[2]
-		  weights <- as.numeric(unlist(strsplit(spl[2], ",")))
 		}
 	}
 }
@@ -118,8 +107,8 @@ if (d == 2) {
 	beta <- matrix( c(1,2,-1,0,3,4,-1,-3,0,2,2,-3,0,1,0,-1,-4,3,2,0, -1,1,3,-1,0,0,2,0,1,-2,1,2,-1,0,3,4,-1,-3,0,2, 2,-3,0,1,0,-1,-4,3,2,0,1,1,2,2,-2,-2,3,1,0,0), ncol=K )
 }
 
-mr <- optimBeta(N, n, K, p, beta, b, link, weights, ncores)
-mr_params <- list("N"=N, "n"=n, "K"=K, "d"=d, "link"=link,
-	"p"=c(p,1-sum(p)), "beta"=beta, "b"=b, "weights"=weights)
+mr <- optimBeta(N, n, K, p, beta, b, link, ncores)
+mr_params <- list("N"=N, "nc"=ncores, "n"=n, "K"=K, "d"=d, "link"=link,
+	"p"=c(p,1-sum(p)), "beta"=beta, "b"=b)
 
-save("mr", "mr_params", file=paste("res_",n,"_",d,"_",link,"_",strw,".RData",sep=""))
+save("mr", "mr_params", file=paste("res_",n,"_",d,"_",link,".RData",sep=""))