X-Git-Url: https://git.auder.net/?a=blobdiff_plain;f=pkg%2Fsrc%2Fadapters%2Fa.EMGLLF.c;fp=pkg%2Fsrc%2Fadapters%2Fa.EMGLLF.c;h=0000000000000000000000000000000000000000;hb=1196a43d961a95abc18d3c8e777e9a4e8233e562;hp=9b004c2fcdbd7e9467bcaa80c0d75216fc11e684;hpb=859c30ec72871f923da0498c14a94e67b0219875;p=valse.git

diff --git a/pkg/src/adapters/a.EMGLLF.c b/pkg/src/adapters/a.EMGLLF.c
deleted file mode 100644
index 9b004c2..0000000
--- a/pkg/src/adapters/a.EMGLLF.c
+++ /dev/null
@@ -1,91 +0,0 @@
-#include <R.h>
-#include <Rdefines.h>
-#include "EMGLLF.h"
-
-// See comments in src/sources/EMGLLF.c and R/EMGLLF.R (wrapper)
-SEXP EMGLLF(
-	SEXP phiInit_,
-	SEXP rhoInit_,
-	SEXP piInit_,
-	SEXP gamInit_,
-	SEXP mini_,
-	SEXP maxi_,
-	SEXP gamma_,
-	SEXP lambda_,
-	SEXP X_,
-	SEXP Y_,
-	SEXP eps_
-) {
-	// Get matrices dimensions
-	int n = INTEGER(getAttrib(X_, R_DimSymbol))[0];
-	SEXP dim = getAttrib(phiInit_, R_DimSymbol);
-	int p = INTEGER(dim)[0];
-	int m = INTEGER(dim)[1];
-	int k = INTEGER(dim)[2];
-
-	////////////
-	// INPUTS //
-	////////////
-
-	// get scalar parameters
-	int mini = INTEGER_VALUE(mini_);
-	int maxi = INTEGER_VALUE(maxi_);
-	double gamma = NUMERIC_VALUE(gamma_);
-	double lambda = NUMERIC_VALUE(lambda_);
-	double eps = NUMERIC_VALUE(eps_);
-
-	// Get pointers from SEXP arrays ; WARNING: by columns !
-	double* phiInit = REAL(phiInit_);
-	double* rhoInit = REAL(rhoInit_);
-	double* piInit = REAL(piInit_);
-	double* gamInit = REAL(gamInit_);
-	double* X = REAL(X_);
-	double* Y = REAL(Y_);
-
-	/////////////
-	// OUTPUTS //
-	/////////////
-
-	SEXP phi, rho, pi, llh, S, affec, dimPhiS, dimRho;
-	PROTECT(dimPhiS = allocVector(INTSXP, 3));
-	int* pDimPhiS = INTEGER(dimPhiS);
-	pDimPhiS[0] = p; pDimPhiS[1] = m; pDimPhiS[2] = k;
-	PROTECT(dimRho = allocVector(INTSXP, 3));
-	int* pDimRho = INTEGER(dimRho);
-	pDimRho[0] = m; pDimRho[1] = m; pDimRho[2] = k;
-	PROTECT(phi = allocArray(REALSXP, dimPhiS));
-	PROTECT(rho = allocArray(REALSXP, dimRho));
-	PROTECT(pi = allocVector(REALSXP, k));
-	PROTECT(llh = allocVector(REALSXP, 1));
-	PROTECT(S = allocArray(REALSXP, dimPhiS));
-	PROTECT(affec = allocVector(INTSXP, n));
-	double *pPhi=REAL(phi), *pRho=REAL(rho), *pPi=REAL(pi), *pLlh=REAL(llh), *pS=REAL(S);
-	int *pAffec=INTEGER(affec);
-
-	////////////////////
-	// Call to EMGLLF //
-	////////////////////
-
-	EMGLLF_core(phiInit,rhoInit,piInit,gamInit,mini,maxi,gamma,lambda,X,Y,eps,
-		pPhi,pRho,pPi,pLlh,pS,pAffec,
-		n,p,m,k);
-
-	// Build list from OUT params and return it
-	SEXP listParams, listNames;
-	int nouts = 6;
-	PROTECT(listParams = allocVector(VECSXP, nouts));
-	char* lnames[6] = {"phi", "rho", "pi", "llh", "S", "affec"}; //lists labels
-	PROTECT(listNames = allocVector(STRSXP,nouts));
-	for (int i=0; i<nouts; i++)
-		SET_STRING_ELT(listNames,i,mkChar(lnames[i]));
-	setAttrib(listParams, R_NamesSymbol, listNames);
-	SET_VECTOR_ELT(listParams, 0, phi);
-	SET_VECTOR_ELT(listParams, 1, rho);
-	SET_VECTOR_ELT(listParams, 2, pi);
-	SET_VECTOR_ELT(listParams, 3, llh);
-	SET_VECTOR_ELT(listParams, 4, S);
-	SET_VECTOR_ELT(listParams, 5, affec);
-
-	UNPROTECT(10);
-	return listParams;
-}