X-Git-Url: https://git.auder.net/?a=blobdiff_plain;ds=sidebyside;f=test%2Fhelper.R;fp=test%2Fhelper.R;h=8ec122bd368f49e5127db6ffc2b5ac9bb8582353;hb=aa480ac1fef50618978307a4df2cf9da1e285abc;hp=0000000000000000000000000000000000000000;hpb=321e13a991a5a0e6c97225fdca436870e5e805d1;p=valse.git diff --git a/test/helper.R b/test/helper.R new file mode 100644 index 0000000..8ec122b --- /dev/null +++ b/test/helper.R @@ -0,0 +1,58 @@ +#' Generate a sample of (X,Y) of size n with default values +#' +#' @param n sample size +#' @param p number of covariates +#' @param m size of the response +#' @param k number of clusters +#' +#' @return list with X and Y +#' +generateXYdefault = function(n, p, m, k) +{ + meanX = rep(0, p) + covX = diag(p) + covY = array(dim=c(m,m,k)) + for(r in 1:k) + covY[,,r] = diag(m) + π = rep(1./k,k) + #initialize beta to a random number of non-zero random value + β = array(0, dim=c(p,m,k)) + for (j in 1:p) + { + nonZeroCount = sample(1:m, 1) + β[j,1:nonZeroCount,] = matrix(runif(nonZeroCount*k), ncol=k) + } + + sample_IO = generateXY(n, π, meanX, β, covX, covY) + return (list(X=sample_IO$X,Y=sample_IO$Y)) +} + +#' Initialize the parameters in a basic way (zero for the conditional mean, uniform for +#' weights, identity for covariance matrices, and uniformly distributed for the +#' clustering) +#' +#' @param n sample size +#' @param p number of covariates +#' @param m size of the response +#' @param k number of clusters +#' +#' @return list with phiInit, rhoInit,piInit,gamInit +#' +basicInitParameters = function(n,p,m,k) +{ + phiInit = array(0, dim=c(p,m,k)) + + piInit = (1./k)*rep(1,k) + + rhoInit = array(dim=c(m,m,k)) + for (i in 1:k) + rhoInit[,,i] = diag(m) + + gamInit = 0.1 * matrix(1, nrow=n, ncol=k) + R = sample(1:k, n, replace=TRUE) + for (i in 1:n) + gamInit[i,R[i]] = 0.9 + gamInit = gamInit/sum(gamInit[1,]) + + return (list("phiInit"=phiInit, "rhoInit"=rhoInit, "piInit"=piInit, "gamInit"=gamInit)) +}