source("helper.R")
+library(valse)
-generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
- rank = c(1,2,4))
+generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, rank = c(1,2,4))
{
- tau = 1e-6
- pi = rep(1.0/k, k)
- rho = array(dim=c(m,m,k))
+ eps = 1e-6
+ Pi = rep(1.0/k, k)
+ Rho = array(dim=c(m,m,k))
for(i in 1:k)
- rho[,,i] = diag(1,m)
- require(valse)
+ Rho[,,i] = diag(1,m)
xy = generateXYdefault(n, p, m, k)
- testFolder = "../data/"
+ testFolder = "./data/"
dir.create(testFolder, showWarnings=FALSE, mode="0755")
#save inputs
- write.table(as.double(rho), paste(testFolder,"rho",sep=""),
+ write.table(as.double(Pi), paste(testFolder,"Pi",sep=""),
row.names=F, col.names=F)
- write.table(as.double(pi), paste(testFolder,"pi",sep=""),
+ write.table(as.double(Rho), paste(testFolder,"Rho",sep=""),
row.names=F, col.names=F)
write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
row.names=F, col.names=F)
row.names=F, col.names=F)
write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
row.names=F, col.names=F)
- write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+ write.table(as.double(eps), paste(testFolder,"eps",sep=""),
row.names=F, col.names=F)
write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
row.names=F, col.names=F)
write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
row.names=F, col.names=F)
- res = EMGrank_R(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
+ res = valse::EMGrank(Pi,Rho,mini,maxi,xy$X,xy$Y,eps,rank,fast=FALSE)
#save output
- write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)
- write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F)
+ write.table(as.double(res$phi),paste(testFolder,"phi",sep=""),row.names=F,col.names=F)
+ write.table(as.double(res$LLF),paste(testFolder,"LLF",sep=""),row.names=F,col.names=F)
}